Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq318 405 8e-111 seq158 150 3e-34 seq170 131 2e-28 seq2556 113 7e-23 seq2 84.2 3e-14 seq108 78.8 1e-12 seq1143 75.2 2e-11 seq56 75.2 2e-11 >seq318 Length=128710 Score = 405 bits (448), Expect = 8e-111 Identities = 247/261 (95%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||||| Sbjct 67454 CGATGCATGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGAGCAGTTT-CGTCCAGGCCC 67512 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 67513 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGTTGCAGCGAGCAATCGCGGTCG 67572 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 67573 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 67632 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 67633 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGGCAGCTTCCGAG 67692 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 |||||||||||||| |||||| Sbjct 67693 CGAGTCTGCTTGGCGGCTTCG 67713 >seq158 Length=78100 Score = 150 bits (166), Expect = 3e-34 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 33 TCTTCGCGCGCTTTTT-TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGT 91 ||| | ||||| ||| ||| | |||||||||||| |||||||||| |||||||||| Sbjct 63442 TCTGCTCGCGCATTTCGTCGCTGATGCCCGGTGCCGGTGCTTCTTCCACCACCTTCTGGT 63501 Query 92 GACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGG 151 | || || |||| |||||| ||||| || || ||||||||||||| |||||||||||||| Sbjct 63502 GGCGGCGCTGCATCGAGCAGTCGCGCTCACCGAGGTGGATGGCGTTGCCCTGGCCGTCGG 63561 Query 152 ACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCG 211 ||| || || | |||||||| || || || |||| |||| |||| ||| ||| Sbjct 63562 CCAGCACCTGGATCTCCACGTGGCGCGGATTCTCCAGGAACTTCTCCATGTACACCTGGT 63621 Query 212 GGTTGCCGAACCAGGCGCCCGCTTCGGA 239 ||||| ||| ||| ||||||||| Sbjct 63622 CGTTGCTGAAGGCGGCCTTCGCTTCGGA 63649 >seq170 Length=203534 Score = 131 bits (144), Expect = 2e-28 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| |||||||||||||| | |||||||||||||| || |||| ||||| ||||| Sbjct 183687 GCCCGGGGCCGGCGCTTCTTCGATGACCTTCTGGTGACGGCGCTGCATGGAGCAGTCGCG 183746 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| | ||||| || |||||||| ||| || || | |||||| || || Sbjct 183747 TTCGCCCAGCCACACGGCGTTGCGTCCGCCGTCGGCCAGCACCTGGATTTCCACATGGCG 183806 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 ||||| ||| |||| |||| ||||| |||||| |||| |||||||||||| Sbjct 183807 CGGGTTCTCGAGGAACTTCTCCATATAGACTTCGGGGTTGTTGAACGCGGCGCCCGCTTC 183866 Query 237 GGAGCGAGTC 246 || || ||| Sbjct 183867 CGAACGCGTC 183876 >seq2556 Length=7931 Score = 113 bits (124), Expect = 7e-23 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129 ||||||||| ||||||||||| || || |||| |||||| ||||| |||||||| || Sbjct 3207 GCTTCTTCCCAGACCTTCTGGTGGCGGCGCTGCAACGAGCAGTCGCGTTCGCCCAGATGC 3266 Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189 | ||| | |||| ||||||| || || || ||||| | ||||| || || |||| Sbjct 3267 ACGGCCTTGCCCATGCCGTCGCCCATCACCTGAACTTCGATATGACGCGGCTTCTGCAGG 3326 Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 |||||||| | |||||| | || || ||| || ||||| ||||||||||| Sbjct 3327 TACTTTTCGATGTAGACGGCGTC--GTCGCCAAAGGCTGCGCCGGCTTCGGAGCG 3379 >seq2 Length=204445 Score = 84.2 bits (92), Expect = 3e-14 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 || ||| || || |||||||||||||| ||||||||||| || || |||| |||||| || Sbjct 17328 CATGCCGGGCGCGGGCGCTTCTTCCAGCACCTTCTGGTGGCGGCGCTGCACCGAGCAGTC 17269 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| ||| ||||| | ||| ||| |||| |||| | || || | ||| | || Sbjct 17268 GCGCTCGAACAGGTACACCACGTTGCCGTGGCTGTCGCCGAACACCTGGATTTCGATATG 17209 Query 174 ACGTGGGTTGGTC-AGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAAC 222 ||| ||| | || | |||||| |||| || || |||||||||| Sbjct 17208 ACGCGGG-CGCTCGACGTACTTCTCCACCAGCACGTGCGCGTTGCCGAAC 17160 >seq108 Length=183801 Score = 78.8 bits (86), Expect = 1e-12 Identities = 124/175 (71%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 66 CGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAG 125 ||||||||| || | ||||||||| | || || |||| |||||| ||||| ||| ||| Sbjct 71137 CGGCGCTTCCTCGAACACCTTCTGGCGCCGCCGCTGCAACGAGCATTCGCGTTCGAACAG 71078 Query 126 GTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGT 185 ||| | ||| | |||||||||| || ||| ||||| || | || || | | Sbjct 71077 GTGCACAGCGCG---CTGGCCGTCGCCCAATACCTGCACCTCGATATGGCGGGCACGCGG 71021 Query 186 CAGGTACTTTTCCAGGTAGA--CCATCGGGTTGCCGAACCAGGCGCCCGCTTCGG 238 |||||| ||||||||||| ||| | || |||||| ||||| || |||| Sbjct 71020 CAGGTAGCGTTCCAGGTAGACGCCACC--GTCGCCGAAGGCGGCGCGGGCCTCGG 70968 >seq1143 Length=37107 Score = 75.2 bits (82), Expect = 2e-11 Identities = 104/146 (71%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 ||||||||| ||||| |||||||| | || || || || || || || | ||||||||| Sbjct 6195 CAGGCCCGGCGCCGGGGCTTCTTCGACGACTTTTTGATGGCGGCGCTGGATCGAGCAATC 6136 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| || |||| | | ||| || || ||||| | || || | |||||||| Sbjct 6135 GCGCTCATTGAGGTACAGGCAGTGACCGTGCTGGTCGGCGAACACCTGGATCTCCACGTG 6076 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCA 199 ||| || ||| || |||||||||| Sbjct 6075 ACGCGGCTTGAGCAAATACTTTTCCA 6050 >seq56 Length=468132 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48 TTCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGA 107 |||| || ||| || || || |||||||| | ||||||||||| || || |||| ||| Sbjct 294597 TTCGGTCATGCCGGGCGCGGGGGCTTCTTCGATGACCTTCTGGTGGCGGCGCTGCACCGA 294538 Query 108 GCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTC 167 ||| ||||| ||| ||||| || | || ||| ||| |||| | ||| || | ||| Sbjct 294537 GCAGTCGCGCTCGAACAGGTAGACGCAGTTGCCATGGGTATCGGCGAATACCTGGATTTC 294478 Query 168 CACGTGACGTGGGTTGGTCAGGTA 191 | ||| || || || |||||| Sbjct 294477 AATGTGGCGCGGCTTTTGCAGGTA 294454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735926368490