Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq596 845 0.0 seq68 383 6e-104 seq353 98.7 4e-18 seq78 86.0 2e-14 seq22 75.2 4e-11 >seq596 Length=58237 Score = 845 bits (936), Expect = 0.0 Identities = 557/604 (92%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 ||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||| Sbjct 49638 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTTGCCGAGAA 49583 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| ||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 49582 GCGGCT-GACGAAGGATT-GCAGCTCGGAGATCTGCGCTTTCTT-CTTGGCGTTGTCCGA 49526 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 49525 CAGCAACTGCTCGCGGGACTGGGTCGCCACGGTCATGTATTCGTCGTAGTTGCCCGGGAA 49466 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 49465 CAGGCGCAGCTCGCCGTAGTCCAGGTCGGCCATGTGGGTGCAGACGCTGTTCAGGAAGTG 49406 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 49405 ACGGTCGTGAGAGATGATGATCATCAGGCTGTTACGCTGGGTCAGGATGTTTTCCAGCCA 49346 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||| Sbjct 49345 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAACACTTCCGGATC 49286 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 49285 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCTGGTGACACTTCACTCAT 49226 Query 421 CGGACCGAAGTGCTGCTCCA-GCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGG 479 ||| ||| ||||||||| | || || ||||||| |||||||||| ||||||||| |||| Sbjct 49225 CGGGCCGTTGTGCTGCTCGATGCCGA-TACCCAGGCCCAGCAGCAACTCACCGGCGCGGG 49167 Query 480 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGC 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 49166 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAAGTCGGTTTCCAGCTCGGCCACGGCCATGC 49107 Query 540 CGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCC 599 |||| |||||| |||| |||||||||||||| || | || ||||||||||||||||||| Sbjct 49106 CGTCGTCTTCGGTCATCTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCC 49047 Query 600 ACAG 603 |||| Sbjct 49046 ACAG 49043 >seq68 Length=246065 Score = 383 bits (424), Expect = 6e-104 Identities = 379/486 (78%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 106 CTTGGCGTTGTCCGACAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTC 165 ||||||||||| |||| ||| | ||||||| |||||||| | |||||| ||||| Sbjct 177030 CTTGGCGTTGTTGGACACCAGGCGTTCGCGGGCCTGGGTCGAGGCCAGCATGTAGTCGTC 177089 Query 166 GTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACAC 225 ||||||||||||| | | ||| | || ||||| |||| ||| |||||||| || ||||| Sbjct 177090 GTAGTTGCCCGGGTAGATGCGGATTTCACCGTAATCCACGTCGGCCATGTGTGTGCACAC 177149 Query 226 GCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCT--GGAACGCTGGGTC 283 ||||||||||||||| ||||| ||||||||||||| ||| || | | | | Sbjct 177150 CTGGTTCAGGAAGTGACGATCGTGGCTGATGATGATCATCGTGCTCTGGTAGCC--GTTG 177207 Query 284 AGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGC 343 || | ||||||||||||||||| ||||||||||||| || ||||||||||||||| ||| Sbjct 177208 AGCACGTTTTCCAGCCAGCGGATCGTGTTGATGTCCAGGTTGTTGGTCGGTTCGTCCAGC 177267 Query 344 AACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCC 403 |||||||| || || | || ||||||||||| ||||||| || ||||||||||||||| Sbjct 177268 AACAGCACGTCGGGGTTCGAGAACAGCGCCTGCGCCAGCAGCACGCGCAGCTTCCAGCCC 177327 Query 404 GGGGACACTTCGCTCATCGGACCGAAGTGCTGCTC--CAGCGGAATACCCAGACCCAGCA 461 || | |||||||| |||||| | |||||| || ||||| || |||| ||||||| Sbjct 177328 GGCGCCACTTCGCGCATCGGCAGGTTGTGCTGGTCGACAGCG--ATTTCCAGGCCCAGCA 177385 Query 462 GCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCA 521 |||| || || || |||| |||||||||||||||||| ||||||||||| || ||| | Sbjct 177386 GCAGTTCGCCCGCGCGGGCTTCGGCGGTGTAGCCGTCGTACTCGGCGAACTTGGCTTCAA 177445 Query 522 GCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCAC 581 | |||||| || |||| ||| |||||| | |||||| || ||| || | |||| Sbjct 177446 GGTCGGCCGCGCGCATGTAGTCGTCTTCGGTGGCTTCCGGATTCGCGTAGATGGCGTCAC 177505 Query 582 GCTCGG 587 |||||| Sbjct 177506 GCTCGG 177511 >seq353 Length=102661 Score = 98.7 bits (108), Expect = 4e-18 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 199 GTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGAT 258 |||||| || ||| |||| || | | | ||||||| ||||||||| | |||| Sbjct 87734 GTCCAGTTCGAGGATGCGGGTTGCCAGGTTCTGCAGGAAGGAACGGTCGTGCG---TGAT 87790 Query 259 GATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTG 313 || || || | |||||| | | ||| | ||| |||||| ||| | | | Sbjct 87791 GAACAGCACGGCGCCCTGGAAATCCTTG--AGGGCTTCTTCAAGCCAGGCGATTGCGCCG 87848 Query 314 ATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCC 373 ||||||| ||||||||||||||||||||||| || || || || ||||||| ||| ||| Sbjct 87849 ATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAACAGATCCGGCTCGGAAACCAGGGCC 87908 Query 374 TGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCG 415 |||||||||| || || | |||||| ||||| |||| Sbjct 87909 TGGGCCAGCAGGACGCGGCGACGCCAGCCGCCGGACAATTCG 87950 >seq78 Length=82074 Score = 86.0 bits (94), Expect = 2e-14 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 291 TTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCA 350 ||||||||||| ||||| | |||||||| ||||||||||||||||||||||| ||||| Sbjct 46921 TTTCCAGCCAGTCGATGGCTTCGATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAGCA 46980 Query 351 CTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACA 410 || || ||| | |||||| || | |||| || || ||||| ||| ||||| Sbjct 46981 GGTCCGGCGAGGACACCAGCGCGCGGCCGAGCAGCACGCGGCGCTTCATGCCGCCGGACA 47040 >seq22 Length=536123 Score = 75.2 bits (82), Expect = 4e-11 Identities = 118/164 (72%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 223 CACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGG---AACGCTG 279 ||||| || |||||| | || ||||| || || | ||||| | || | | |||| Sbjct 75553 CACGCCGTCCAGGAAATCGCGATCGTGCGAAATCACGATCAGCGTGCCCGGGTAGCGCTT 75612 Query 280 G-GTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGT 338 | | ||| | |||||||||| ||||| || | ||||||||||||||| ||||||| Sbjct 75613 GAGCCAG----TCTTCCAGCCAGATGATGGCGTCCAGGTCCAAGTGGTTGGTGGGTTCGT 75668 Query 339 CGAGCAACAGCACTTCAGGATCGG-AAAACAGCGCCTGGGCCAG 381 | |||| ||||| || ||| || | | |||||| || ||||| Sbjct 75669 CCAGCAGCAGCAGGTC-GGACGGGCACATCAGCGCTTGCGCCAG 75711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881399614892