Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq994 398 3e-108 seq242 356 8e-96 seq291 349 1e-93 seq553 325 1e-86 seq160 269 1e-69 seq3209 134 5e-29 seq3207 131 6e-28 >seq994 Length=2704 Score = 398 bits (440), Expect = 3e-108 Identities = 288/333 (86%), Gaps = 9/333 (3%) Strand=Plus/Plus Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGC 326 |||||||||| ||||||||||||||||||||||||||||| | | ||| ||| | ||| Sbjct 1103 CTTCAACCTGGCCATGGATAGATCACTTCGCTTCGGGTCTAGGACATGCGACTGAATCGC 1162 Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGC 386 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 1163 CCTATTCAGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCCACATATCGC 1222 Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCA 446 ||||||||||||||||||||||||||||||| |||||| |||| | | | Sbjct 1223 TAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACC-----CCTACTAAGGA----G 1273 Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT 506 ||||| |||| ||||| ||| | ||||||||||||||||||||||||| || |||||||| Sbjct 1274 GCTCCAACGGTTTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTCCCGGGGTACT 1333 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1334 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCATCTGGGAGTATTTAGGCTTAT 1393 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||| | |||||||||||| |||||| Sbjct 1394 CAGGTGGTCCTGACAGATTCACACGGGATTTCA 1426 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 803 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 861 Query 61 GAGTTTGGTTG 71 |||||||| || Sbjct 862 GAGTTTGGCTG 872 >seq242 Length=118535 Score = 356 bits (394), Expect = 8e-96 Identities = 417/556 (75%), Gaps = 17/556 (3%) Strand=Plus/Plus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC 104 |||| | || |||||||||||| | || |||||| | | |||||||| | || Sbjct 114893 ACTTGCGGGTATTCGGAGTTTGCCATAGTTTGGTAAGTCGCCATGACCCCCTAG-CTATA 114951 Query 105 -CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163 |||||||||||| || | | | || || || || |||||||| |||||| |||| Sbjct 114952 ACAGTGCTCTACCCCCCGCA-GTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGA 115010 Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223 ||||||||| | | |||| || ||||||||||||||||||||| ||||||||| | || Sbjct 115011 ACCAGCTATTTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAATTT 115070 Query 224 TTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283 |||||| | |||||||||||||||||| || ||||| |||||||||| |||||| Sbjct 115071 TTCAACATTAGTGGGTTCGGTCCTCCAGCACGTGTTACCGTGCCTTCAACCTGGCCATGG 115130 Query 284 ATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTT 343 |||||||| | | ||||||||| | | || ||| | |||||||||||||||||||| Sbjct 115131 ATAGATCATCTGGTTTCGGGTCTACACCCAGCGACTGAATCGCCCTATTCGGACTCGCTT 115190 Query 344 TCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATT 403 ||||||||||| ||| | | ||||||||| || || || | || |||| | | |||| Sbjct 115191 TCGCTACGGCTTCCCTATTC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATT 115248 Query 404 CTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAG 463 | ||||||| |||| ||||| || | |||| ||||| || | ||||| Sbjct 115249 ATACAAAAGGTACGCAGTCAC------CCCACAAGG-----AGGCTCCTACTGTTTGTAT 115297 Query 464 GCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCAC 523 ||| | ||||||||| |||||||||||||| | ||||| |||||| |||||||||||| Sbjct 115298 GCATACGGTTTCAGGATCTATTTCACTCCCCTTCCGGGGTTCTTTTCGCCTTTCCCTCAC 115357 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| | |||||||||| ||| || ||||||| ||| Sbjct 115358 GGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATC 115417 Query 584 TTCACACGAAATTTCA 599 |||| || |||||| Sbjct 115418 TTCAAACAGGATTTCA 115433 >seq291 Length=3003 Score = 349 bits (386), Expect = 1e-93 Identities = 418/557 (75%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 1527 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 1468 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 1467 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 1410 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 1409 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 1350 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 1349 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATG 1290 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 1289 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 1231 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| ||||| || || || |||| | | ||| Sbjct 1230 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 1173 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| ||||| | || |||| || ||||| || | ||||| Sbjct 1172 TATACAAAAGGTACGCAGTCAC--AGAAC---AAAG-----TCTGCTCCCACTGCTTGTA 1123 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | ||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 1122 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 1063 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 1062 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 1003 Query 582 GATTCACACGAAATTTC 598 ||||| || || |||| Sbjct 1002 TATTCAGACAAAGTTTC 986 >seq553 Length=5624 Score = 325 bits (360), Expect = 1e-86 Identities = 406/547 (74%), Gaps = 26/547 (5%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||||| || || |||| | || ||||| ||| |||| |||| Sbjct 3338 GCATTCGGAGTTTGTCTGGATTTGGTAGGATTTGACTCCCCCGCACCCAATCAGTAGCTC 3279 Query 113 TACCTCCGGGAAGAA----ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| || || || | | |||||| |||||| |||||||||||| || || Sbjct 3278 TACCTCTA--AATAACTTTAC-CTCAACGCTGTTCCTAAAAACATTTCGGGGAGTACGAG 3222 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | ||||||||| |||||||||||||| |||||| |||||| | ||||||| Sbjct 3221 CTATTTCCCAGTTTGATTAGCCTTTCACCCCTACCCACAGATCATCCGGAAACTTTTCAA 3162 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | |||||||||||||| || ||||| |||||||||| |||||| |||| Sbjct 3161 CGTTTATCGGTTCGGTCCTCCAGTACGTGTTACCGCACCTTCAACCTGTCCATGGGTAGA 3102 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | |||| |||| || ||| ||||||||||||| |||||||||||||| Sbjct 3101 TCACAAGGTTTCGCGTCTACCTCCCCTGACT-ATACGCCCTATTCAGACTCGCTTTCGCT 3043 Query 349 ACGGCTAC----CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404 ||| | | | | || ||||||| || | | || |||||| ||||||||| Sbjct 3042 TCGGATCCGTGTCTTAAAC-ACTTAACCTTGCCAGAGAAGAGTAACTCGTAGGCTCATTA 2984 Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464 | |||||||||||||||||| | |||| | || |||||||| | ||||| | Sbjct 2983 TGCAAAAGGCACGCCGTCAC--GCCACCT-----GGAC----GCTCCGACCGCTTGTAAG 2935 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCAC 523 |||| ||||||||| |||||||||||||| | ||||| ||||||||||||||||||| Sbjct 2934 CACACAGTTTCAGGTTCTATTTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCCTCAC 2875 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| | |||||||||||| |||| ||| |||| ||| |||| Sbjct 2874 GGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTACCGGATGGTGCCGGCAGA 2815 Query 584 TTCACAC 590 ||| ||| Sbjct 2814 TTCCCAC 2808 >seq160 Length=64135 Score = 269 bits (298), Expect = 1e-69 Identities = 395/547 (72%), Gaps = 25/547 (5%) Strand=Plus/Minus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 3370 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 3313 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 3312 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 3253 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| |||| || |||||| |||| ||||| |||||||| ||| Sbjct 3252 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCCTAATCACAGCTCATCCCCGTCTTTTG 3193 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | |||||||||| |||||| | |||| ||||| |||| ||||| | Sbjct 3192 CAACAGACGTGGGTTCGGGCCTCCAGTACCTGTTACGGCACCTTCACCCTGGCCATGACT 3133 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | ||||||||| | || ||| || |||||| || |||||| |||| Sbjct 3132 AGATCACCCGGTTTCGGGTCTACTGCCCGCGACT-ATGCGCCCTTATCAGACTCGGTTTC 3074 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 || || || ||| | || |||||| || || || ||| || |||| | | |||| | Sbjct 3073 CCTTCGCCTCCCCTATAC-GGTTAAGCTTGCCAC-GAACAGTAAGTCGCTGACCCATTAT 3016 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC-AGCTCCGACGGATTGTAGG 464 ||||||| |||| ||||| || ||| |||||| || | ||||| | Sbjct 3015 ACAAAAGGTACGCAGTCAC------TCT---------TTCGAGCTCCTACTGCTTGTACG 2971 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCAC 523 |||| ||||||||| |||||||||||||| | | ||||| |||||| |||||||||||| Sbjct 2970 CACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 2911 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 2910 GGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATG 2851 Query 584 TTCACAC 590 |||| || Sbjct 2850 TTCAGAC 2844 >seq3209 Length=1033 Score = 134 bits (148), Expect = 5e-29 Identities = 85/92 (92%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| | Sbjct 1033 TTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTCAGGCTTATC 974 Query 568 GGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||||||||||| | |||||| Sbjct 973 GGGTGGTCCCGACAGATTCACACCAGATTTCA 942 >seq3207 Length=1578 Score = 131 bits (144), Expect = 6e-28 Identities = 121/150 (81%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGC-CCCCTAGACCATCCAGTGC 110 ||| ||||||||||||||| || ||||| ||| | ||||||| ||||||||||| Sbjct 39 CGGTATTCGGAGTTTGGTTAGGTTTGGTAAATCGGTGAGATCCCCTAGCCCATCCAGTGC 98 Query 111 TCTACCTCCGGGAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| ||| | || ||||||| |||||||| |||||| |||||||||| Sbjct 99 TCTACCCCCG--AAGGTATTCGATCGACGCTCTACCTAAATAGATTTCGCGGAGAACCAG 156 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCC 198 ||||| | |||||||||||||||||||||| Sbjct 157 CTATCTCCAAGTTTGATTGGCCTTTCACCC 186 Score = 87.8 bits (96), Expect = 7e-15 Identities = 99/129 (77%), Gaps = 9/129 (7%) Strand=Plus/Plus Query 400 CATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATT 459 |||| | ||||||| |||| |||||| | || ||| ||| ||||| || | || Sbjct 397 CATTATACAAAAGGTACGCTGTCACCCAGAAC---AAAT---CTTGGGCTCCAACTGTTT 450 Query 460 GTAGGCACATGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTC 517 ||||||| ||||||||| || ||||||||||| | | ||||| ||||||||||||| Sbjct 451 GTAGGCATTCGGTTTCAGGATCTCTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTC 509 Query 518 CCTCACGGT 526 ||||||||| Sbjct 510 CCTCACGGT 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817412296448