Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq291 654 0.0 seq242 437 2e-120 seq160 419 6e-115 seq553 279 1e-72 seq994 205 2e-50 seq3207 149 2e-33 seq3209 78.8 2e-12 >seq291 Length=3003 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1375 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 1318 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 1317 GT-GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 1263 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1262 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 1204 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1203 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACA 1145 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 AAGTCTGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 1085 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 1025 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 967 >seq242 Length=118535 Score = 437 bits (484), Expect = 2e-120 Identities = 356/416 (86%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || |||| ||||||||| |||| ||||||||||||||| | Sbjct 115045 CCTATCCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGTCCTCCAGCACG 115102 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| |||| ||||||| |||| ||||||||| | ||||| |||||||| | Sbjct 115103 T-GTTACCGTGCCTT-CAACCTGGCCAT-GGATAGATCATCTGGTTT-CGGGTCTACA-C 115157 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 ||||||||| | ||||||| | |||||||||| ||||||| || |||||||||||||| Sbjct 115158 CCAGCGACTGAATCGCCCTATTCGGACTCGCTTT-CGCTACGGCTTCCCTATTCGGTTAA 115216 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 115217 CCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCACA 115275 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | | || |||| |||| ||||| |||||||||||||||||||||||||||||||| |||| Sbjct 115276 AGGAGG-CTCCTACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCT-TCCG 115333 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 115334 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTA 115393 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||||||||| |||| ||| |||| |||| ||| |||||| Sbjct 115394 GCCTTGGAGGATGGTCCCCCCATCTTCAAACAGGATTTCACGTGTCCCGCCCTACT 115449 >seq160 Length=64135 Score = 419 bits (464), Expect = 6e-115 Identities = 346/411 (84%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| || | ||||| |||| | || ||||||| |||||||| | |||| Sbjct 3214 CACAGCTCATCCCCGT--CTTTTGCAACAGACGTGGGTTCGGGCCTCCAGTACCT-GTTA 3158 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 | ||||| || |||| |||| | |||||| |||||||| |||||||| | ||| ||| Sbjct 3157 CGGCACCTT-CACCCTGGCCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 3102 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189 |||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| || Sbjct 3101 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 3044 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||| | | |||||||||||||||||||||||||||||||||||||| | || Sbjct 3043 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCTTTCGAG---- 2988 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2987 CTCCTACTGCTTGTACGCACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 2928 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 2927 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGG 2868 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 2867 AGGATGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 2817 >seq553 Length=5624 Score = 279 bits (308), Expect = 1e-72 Identities = 312/402 (78%), Gaps = 19/402 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 3187 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 3131 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| ||||||| |||| || |||||| | ||||| || ||||| |||| Sbjct 3130 ACCGCACCTT-CAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCCCCT- 3075 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAAGC 184 ||||| |||||||| | ||||||||||| |||| || ||| | || | |||| | Sbjct 3074 GACTATACGCCCTATTCAGACTCGCTTT-CGCTTCGGATCCGTGTCTTAAACACTTAACC 3016 Query 185 TTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || |||| ||| | ||| ||| | | |||||| ||||||| |||| ||||| | || Sbjct 3015 TT-GCCAGAGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACGCCACC- 2958 Query 244 AGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| ||||| || ||||||| ||| || |||||||| |||||||||||||||| | | Sbjct 2957 --TGGACGCTCCGACCGCTTGTAAGCACACAGTTTCAGGTTCTATTTCACTCCCCTGTTC 2900 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 2899 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTT 2840 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTC 403 |||||| ||||||| || || |||| |||| | |||| Sbjct 2839 AGCCTTACCGGATGGTGCCGGCAGATTCCCACAAGGCGTCTC 2798 >seq994 Length=2704 Score = 205 bits (226), Expect = 2e-50 Identities = 258/344 (75%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-C 136 ||||||||| |||| ||||||||| | | || |||||||| | |||||| | | Sbjct 1104 TTCAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGACAT-GCGACTGAATC 1160 Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAA 196 |||||| | ||||||||||| ||||||| || ||| | ||| | | | | ||||| | Sbjct 1161 GCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTCGCCACATAT 1219 Query 197 AA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTGGGCTCCC 254 ||| |||| | | |||| | ||||||| |||| ||||||| || ||| |||||| Sbjct 1220 CGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACCCCTACTAAGGAGGCTCCA 1279 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 || | ||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||| Sbjct 1280 ACGGTTTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCA 1338 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| || | |||||||||| | ||||||||| ||| | | Sbjct 1339 CCTTTCCCTCACGGTACTTGTCCGCTATCGGTCATCTGGGAGTATTTAGGCTTATCAGGT 1398 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||| || ||||| || |||| || || |||| ||||| Sbjct 1399 GGTCCTGACAGATTCACACGGGATTTCACGGGCCCCGTGCTACT 1442 >seq3207 Length=1578 Score = 149 bits (164), Expect = 2e-33 Identities = 109/125 (87%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 209 ACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTTGTA 264 |||||||||||||||||||||| |||||||| ||||| |||||||| |||| ||||| Sbjct 394 ACCCATTATACAAAAGGTACGCTGTCACCCAGAACAAATCTTGGGCTCCAACTGTTTGTA 453 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 324 |||| |||||||||||||| |||||||||||| |||||| |||||| |||||||||| Sbjct 454 GGCATTCGGTTTCAGGATCTCTTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTC 513 Query 325 ACGGT 329 ||||| Sbjct 514 ACGGT 518 >seq3209 Length=1033 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| ||||||||||||||||||||| | |||||||||| | |||||| || ||| Sbjct 1033 TTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTCAGGCTTATC 974 Query 371 GGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 || ||||||| || ||||| || | |||| || || | || ||||| Sbjct 973 GGGTGGTCCCGACAGATTCACACCAGATTTCACGGGCCCGGTGCTACT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241471779968