Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq552 197 3e-48 seq160 197 3e-48 seq242 188 1e-45 seq553 181 2e-43 seq2145 127 4e-27 seq4 89.7 1e-15 >seq552 Length=1692 Score = 197 bits (218), Expect = 3e-48 Identities = 231/306 (75%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 1056 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1115 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||| Sbjct 1116 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 1175 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| | ||||||||| |||||| | | || ||||| | Sbjct 1176 CGTCGCCTTGGTGAGCCATTACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATA 1235 Query 181 GCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC-TCTGACATTATGCGGTATTAGCGT 238 ||| | | |||| || | | || | ||| |||||||||||||||| Sbjct 1236 GCGCAAGGCCCGAAGGTC---CCCTGCTTTCTCCCGTAGGAC-GTATGCGGTATTAGCGT 1291 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||| ||||||| || | || |||||| || || | | |||||||||||||| Sbjct 1292 CCGTTTCCGGACGTTATCCCCCACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCC 1350 Query 299 GCCACT 304 ||| || Sbjct 1351 GCCGCT 1356 >seq160 Length=64135 Score = 197 bits (218), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| |||||| ||||||||||||||||||||||||||| Sbjct 773 GCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 714 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 713 GGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGC 654 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG-AT 185 |||||||||| ||| | | ||||||| |||||| | | || ||||| || ||| | Sbjct 653 CTTGGTGGGCCTTTACCCCGCCAACTAGCTAATCCGACATCGGCTCATCTATCCGCGCAA 594 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | |||| || | || || | |||||||||||||||| ||||| Sbjct 593 GGCCCGAAGGTC---CCCTGCTTTCACCCGAAGGTCGTATGCGGTATTAGCGTAAGTTTC 537 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||||||| || | | ||||| || || | | || || ||||||||||||||||| Sbjct 536 CCTACGTTATCCCCCACGAAAAGGTAGATT-CCGATGTATTCCTCACCCGTCCGCCACT 479 >seq242 Length=118535 Score = 188 bits (208), Expect = 1e-45 Identities = 134/154 (87%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||| Sbjct 117607 GCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 117666 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | || ||||||| || ||||| |||||||| Sbjct 117667 GGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTCGC 117726 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||||| || ||| | ||||||||| |||||| Sbjct 117727 CTTGGTGAGCCGTTACCCCACCAACTAGCTAATC 117760 >seq553 Length=5624 Score = 181 bits (200), Expect = 2e-43 Identities = 225/306 (74%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| || ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | ||| |||||||| | ||| || Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | | ||||||| ||||| ||| ||||||||| Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| |||| || | || |||| ||||| || ||||||||| ||| | | Sbjct 533 CCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTATGCGGTCTTA--ATCC 476 Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | |||| | ||| || || |||| ||||||| ||| ||||| ||||||| | Sbjct 475 GAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 416 Query 299 GCCACT 304 |||||| Sbjct 415 GCCACT 410 >seq2145 Length=12713 Score = 127 bits (140), Expect = 4e-27 Identities = 169/234 (72%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||||||||||| |||||| | ||| |||||||| || |||| |||||||| |||| Sbjct 12318 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTG 12259 Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATC 190 || ||| ||| | ||||||||| |||||| |||| || |||| || ||||||||| Sbjct 12258 GTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCTCCGATAAATC 12199 Query 191 TTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAAC 250 ||| || ||| || | ||| |||||||||| |||||||| | Sbjct 12198 TTT-CTC-CCGAAGGACG--------------TATACGGTATTAGCACACGTTTCCATGC 12155 Query 251 GTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||||||| || || || || | |||| |||||||||||||| ||| || Sbjct 12154 GTTATTCCGTAGAGATGGGTAGATT-CCCACGCGTTACTCACCCGTCTGCCGCT 12102 >seq4 Length=49023 Score = 89.7 bits (98), Expect = 1e-15 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | || | | |||||| |||||| ||||||||||||| | | |||| | Sbjct 22999 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCC--CATTTTGAGT-T 22943 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || | | | ||| | |||||||||| | ||| |||| ||| || |||| ||| |||| Sbjct 22942 GGACTATATTTCAATTCCAATGTGGCTGATCATCCTCCCAGACCAACTACGAATCATCGG 22883 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | ||| ||| | ||||||||||||| Sbjct 22882 CTTGTTAGGCCTTTACCCTTCCAACTACCTAAT 22850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998296895232