Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001448.1 Length=310 Score E Sequences producing significant alignments: (Bits) Value seq1105 361 1e-97 seq5639 132 9e-29 seq198 75.2 2e-11 >seq1105 Length=92187 Score = 361 bits (400), Expect = 1e-97 Identities = 267/309 (86%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 1 CGACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGG 60 |||| || ||| | |||||||| ||||| | | ||| |||||||||||| || ||||||| Sbjct 70786 CGACTTGCTTGGCGGTGACGCCAGGGCGCGCGCCGATCTTGTCGGTATTACGTGCGATGG 70845 Query 61 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 120 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 70846 CCGTGACGGTGTGCCCGCGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGACCGG 70905 Query 121 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTC-GTTAAGGGTTTAAAAC 179 |||||||||||||||| |||||||||||||||||||||||| | |||||||| || || | Sbjct 70906 TGGCACCAATGATTGCGATCTTGCTCATGACGTTCTCCAGTACGGTTAAGGG-TTGAATC 70964 Query 180 CATTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTC 239 | |||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||| Sbjct 70965 AACTCACCACTGCATTTCGCCCTTGGCGACTTTGGCGCCCAGTTCCAGGGTGCTCTCGTC 71024 Query 240 GGCGAGGGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGCCGCGGAATCCTTCGCTTT 299 | ||| ||||||||||||||| ||| ||||| |||||||| ||||| ||||| || || Sbjct 71025 ACCCAGGTTCGGGTAACGCTTTTGCATCGCCGCAATCAGGGCGGCGGAGTCCTTGGCCTT 71084 Query 300 GGCCGTCTC 308 ||| || || Sbjct 71085 GGCGGTTTC 71093 >seq5639 Length=568 Score = 132 bits (146), Expect = 9e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33 GCGAGCTTGTCGGTATTGCGGGCGATGGCGGTGACGGTATGCCCACGACGCAGCGCTTCT 92 || |||||| ||||||||| |||||||| |||||| |||| || |||||||| |||||| Sbjct 353 GCCAGCTTGCTGGTATTGCGTGCGATGGCTGTGACGCTATGACCGCGACGCAGTGCTTCT 412 Query 93 TCCAGCAGTTGGCTACCGGCACGGCCGGTGGCACCAATGATTGCAATCTTGCTCAT 148 ||||| | |||||||||||||| ||||| || || ||||| |||||||||||||| Sbjct 413 TCCAGTAACTGGCTACCGGCACGTCCGGTAGCGCCGATGATGGCAATCTTGCTCAT 468 >seq198 Length=142842 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 186 CCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTCGGCGAG 245 ||||| |||||| ||||| ||||| || || |||| |||| ||| | | | || Sbjct 258 CCACTGCATTTCACCCTTCGCGACCTTCGCACTGATCTCCAACGAACCCACACCTTGCAG 317 Query 246 GGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGC 281 ||||||||||||||||||||| || ||||||| ||| Sbjct 318 GGTCGGGTAACGCTTTTTCATCGCGGCGATCAAGGC 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 889508131008