Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq16 515 9e-144 seq463 334 2e-89 seq9 315 2e-83 seq2847 147 5e-33 >seq16 Length=55361 Score = 515 bits (570), Expect = 9e-144 Identities = 351/395 (89%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5383 CGATGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 5442 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 5443 CTGTGGCGCGGTCTCGGGTTTCCACGCACTGATCTCCTCGGGCACCACGCCCAAGTTGCT 5502 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 |||||||| | || |||||||||||||| |||||||||||| |||||||||||||||| Sbjct 5503 GGCCAGTGAAGGGCACGCCCGTTACATCGGCTACGGCGGCATGTTGATGGAGTCGTTCGT 5562 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct 5563 GGCCATCATGGCGATGGTTGCCGCTTCGGTGATCGAGCCAGGGGTGTACTTCGCCATGAA 5622 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || ||||||||| |||||||| | |||||||||||||||||||| || Sbjct 5623 CAGCCCGGCCGCGATTGTCGGCGGTGACGTGGTGGCTGTGGCGCAAACCGTCAGCAGCTG 5682 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| ||||| || || ||| || ||| || ||||| | || ||||| |||| Sbjct 5683 GGGTTTTGCAATTACCCCGGAAGCGTTGCAGGCGGTGGCCCATGACATTGGTGAGTCCAC 5742 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| |||||||| || |||||||| |||| Sbjct 5743 CATCCTGGCCCGTGCCGGTGGTGCGCCGACCCTGG 5777 >seq463 Length=128983 Score = 334 bits (370), Expect = 2e-89 Identities = 308/389 (79%), Gaps = 3/389 (1%) Strand=Plus/Minus Query 10 CGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGC 69 |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 96117 CGGCCCGGTCTGGAAGGGCGGCATGTTCCCGTTCCTGTTCATCACCATTGCCTGCGGCGC 96058 Query 70 GGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGA 129 ||| ||||||||||||||||||||| |||||||||||||||||||| || | |||| ||| Sbjct 96057 GGTGTCGGGTTTCCATGCGCTGATCGCCTCGGGCACCACGCCCAAGCTGTTGGCCAATGA 95998 Query 130 GAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCAT 189 | |||| || |||||||| |||||||||||||||||||| ||||||||||| | || Sbjct 95997 GCGCCACATGCGCTACATCGGCTACGGCGGCATGCTGATGGAATCGTTCGTGGCGGTGAT 95938 Query 190 GGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAACAGCCCGGC 249 |||| |||| || |||||| | || || || ||||| |||||||| |||||||||||||| Sbjct 95937 GGCGCTGGTAGCGGCCTCGATCATCGACCCGGGCGTCTACTTCGCGATGAACAGCCCGGC 95878 Query 250 TGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGC---AGTTGGGGCTT 306 || | |||| |||| | || | | | |||||| | ||||| | |||||||| Sbjct 95877 GGCGGTGATCGGTGCCGATGCGGCCTCGGCGGCGCACTTCATCAGCACGACCTGGGGCTT 95818 Query 307 TGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCACCATCCT 366 ||| ||||| || ||| |||| ||| || | ||||| || | |||||||| Sbjct 95817 TGCGATTACCCCCGAGCAGCTGGAAGCCACCGCACTGGCCATCGGCGAGCCGACCATCCT 95758 Query 367 GGCACGTGCCGGCGGCGCGCCGACTCTGG 395 | |||||||| ||||| || || |||| Sbjct 95757 GCACCGTGCCGGTGGCGCACCCACGCTGG 95729 >seq9 Length=436544 Score = 315 bits (348), Expect = 2e-83 Identities = 312/398 (78%), Gaps = 8/398 (2%) Strand=Plus/Plus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||| ||| Sbjct 305338 GACGGTTCCGGCCCGGTGTGGTCGGGCAACCTGTTCCCGTTCCTGTTCATCACCATCGCC 305397 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 || |||||||| ||||| |||||||| |||||||| |||||||||||||||||| || || Sbjct 305398 TGCGGCGCGGTGTCGGGCTTCCATGCCCTGATCTCGTCGGGCACCACGCCCAAGCTGATC 305457 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 | | || | ||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 305458 GAAAACGAAACCCAGGCCCGCTACATCGGTTACGGCGGCATGCTGATGGAATCGTTCGTG 305517 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 ||||||||||| |||| ||||| | ||||| ||||| ||| | |||| |||||||||| Sbjct 305518 GCCATCATGGCCCTGGTGGCCGCTTGCGTGATCGAGCCGGGCATCTACTACGCCATGAAC 305577 Query 242 AGCCCGGCTGCCATTGTCGGCACCGACG-TGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 |||||||| ||| | |||||||| ||| | | ||||| || || ||| || Sbjct 305578 AGCCCGGCCGCCGTCATCGGCACC-ACGCCCGACCAGGTGGCCCAGGTGGTGTCCAGCTG 305636 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTG-TC--GGCCGTTGCCCACAATATCGGTGAAAC 357 |||||| | | || || | | ||| || | || ||| | | ||||||||| Sbjct 305637 GGGCTTCGTGGTGACCCCGGCCGACCTGATCCAGACC---GCCAAGGACGTCGGTGAAAG 305693 Query 358 CACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||| | | |||||||||||||| ||||| |||| Sbjct 305694 CACCATCATCTCGCGTGCCGGCGGCGCACCGACGCTGG 305731 >seq2847 Length=5570 Score = 147 bits (162), Expect = 5e-33 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 32 CTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCGGGTTTCCATGCGCTG 91 || ||||| ||||||||| | || || || || || ||| |||| || |||||||||||| Sbjct 706 CTCTTCCCCTTCCTGTTCGTGACGATCGCGTGCGGGGCGCTCTCCGGGTTCCATGCGCTG 765 Query 92 ATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCATGCCCGTTACATCGGT 151 ||| |||| || || || || ||| | ||| | ||| |||| | || | |||||| Sbjct 766 ATCGCCTCCGGAACGACCCCGAAGCTCATCGAGAAGGAGCGCCAGACGCGCTTCATCGGC 825 Query 152 TACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGC---CTCG 208 |||||||||||||| |||||||||||||| || |||||||| | || ||||| ||| Sbjct 826 TACGGCGGCATGCTCATGGAGTCGTTCGTCGCGATCATGGCCCTCGTCGCCGCGATCTC- 884 Query 209 GTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 ||| || | ||| | |||||||| |||||| Sbjct 885 --GATCGACCAGGGCATCTACTTCGCGATGAAC 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161480041568