Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001581.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value seq1107 187 1e-44 >seq1107 Length=37907 Score = 187 bits (206), Expect = 1e-44 Identities = 299/420 (71%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 ||||||||||||||| || |||| |||| |||||||| || || |||||| | ||||| Sbjct 14085 CCACGGCTTGAGCCACAGGCCCATGCCCAGCAACACCACGGCCCCCGCCAGGGTGCTCAA 14026 Query 299 CCCCAACTGCCACCC-AT-CGTTG--TGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCA 354 ||||| ||| || || | ||| | | | || ||| |||||||| |||| Sbjct 14025 CCCCAGCTGAAGCCAGATACCTTGGATCCTAAA----CAACACCAACGCCGCCAGGCCCA 13970 Query 355 ACAGCACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGC 414 || || | ||||| |||| ||| |||| ||| |||||||| | | ||| Sbjct 13969 TCATCAATGCACTCAACACCCAGTGCCGCTTCCAGGGCAGGGCGCCGAGCAAGTCCTGGC 13910 Query 415 GGTGCATCAGCAACAAGTTCGT-CACCACGACGCCACCCAACGCCGCCAAGGCGATCCCC 473 | ||||||| || ||| || ||| || || || | | || |||| | ||| ||| Sbjct 13909 GCTGCATCAACAGCAACGCGGTGCACAAC-ACCCCGGCGAGGGCGGCCAGCGGGATACCC 13851 Query 474 GGCAGGCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCGTTGACCAGGCTGCCCAG 532 | |||||| | |||| | |||||||| |||||| |||| |||||||||||||| Sbjct 13850 GCCAGGCCAAACACAA-ACGGCAGCACACCCAGCAGCAACACGTTCACCAGGCTGCCCAG 13792 Query 533 CAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCAT 592 || ||||| ||||| |||| ||||||||| ||| |||||||| || || | || Sbjct 13791 CAACTCGCAGCGCAGCGGTTGGCGGGTGTCGCCGGCGGCGTAGGCATAACGCGCCAACAG 13732 Query 593 CGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCAGTGG 652 |||||||||||||| |||||||| ||| ||| ||||||||||||| | |||||| || Sbjct 13731 GGCGTTCCAGGCGCCGAACACCAGCGGCACGGCAAACCAGGCCAGCAACAGCGGCAGCGG 13672 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||||| ||| |||| ||| |||| ||| ||||||||||| ||||| || Sbjct 15489 CGAGAAGACCGTGCCACCCGACACCCTCAGCCTGGCGGATTTCTTCAGCGCGATTGATCA 15430 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108 |||||| ||||| |||||||| |||||||| || || || || ||||| Sbjct 15429 GATGCCCCAGGCTGAAAAGGACCTTGCCGCGCCGGCCGAACCTGAGCC 15382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2006186324043