Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq76 731 0.0 seq26 277 5e-72 seq308 174 4e-41 seq7309 167 6e-39 >seq76 Length=144550 Score = 731 bits (810), Expect = 0.0 Identities = 434/453 (96%), Gaps = 0/453 (0%) Strand=Plus/Plus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 52211 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGACTCACGGATGGCACGACGTTCC 52270 Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 122 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52271 ACCTGGGTGGATTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 52330 Query 123 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCG 182 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 52331 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTTTCGCAGACACTGAAGTCAGCA 52390 Query 183 ATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATG 242 |||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| | |||| Sbjct 52391 ATCACGCCATCCTTCATCGGACGAATGGCAGCAATGTTGCCCGGTGTTCGGCCCAACATG 52450 Query 243 CGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCC 302 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 52451 CGCTTGGCCTCGGTGCCAACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCC 52510 Query 303 ACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52511 ACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCA 52570 Query 363 GTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGGGG 422 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52571 GTGCCCAGGTCGATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGGGA 52630 Query 423 AAAGGACCCTAAGCAACGCGTGGGTAAAAAAGT 455 || |||||||| ||||||||||||||||||||| Sbjct 52631 AAGGGACCCTAGGCAACGCGTGGGTAAAAAAGT 52663 >seq26 Length=118184 Score = 277 bits (306), Expect = 5e-72 Identities = 321/429 (75%), Gaps = 13/429 (3%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 ||||||||||||| ||||| |||||||| | ||||||||| |||||| || |||| Sbjct 95695 CGATCAGGAACACATCACGCGCACCGGCCTCTTCGGCCGATTCCTTGATGGCGCGGCGCT 95636 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||| || | ||| ||||||| |||||| || ||||| || ||||||| | Sbjct 95635 CGACCTGGGTCGAGCCGGCCGGCACGCAGACCAGCACGCGCGGGCTCGGGCGCAGGAAGC 95576 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 | ||| ||||| |||||||||| || |||||| |||| | | |||| |||| Sbjct 95575 GCGACTTGTGCACCTTCTTGATGAAGTGCTTGAGCATCGCCTCGGTGTAGGTGAAATCGG 95516 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| ||||||||||||||||| || |||| | || | ||| || |||||||| |||| Sbjct 95515 CGATGACGCCGTCTTTCATCGGGCGGATGGTGGTGATGTGGCCCGGGGTACGGCCCAGCA 95456 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTG--ATTACC-ATG----GGTC 293 | ||||||| |||| ||| |||||| | ||| | | | ||| ||| |||| Sbjct 95455 TCTGCTTGGCTTCGGCGCCTACGGCA--GCCACGGAACGGGTACCACCGATGGCACGGTC 95398 Query 294 ----CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAAT 349 || | ||| || || || ||||| ||||| ||||| || || | ||||| || || Sbjct 95397 CTGGCGCACGGCGACCACGGACGGCTCGTTCAGCACGATTCCCTGCCCACGCACATAGAT 95338 Query 350 AAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTT 409 ||||||||||| ||||||||||| ||||| || || |||| |||||||| |||||||| Sbjct 95337 GAGGGTGTTGGCCGTGCCCAGGTCGATGGACAGGTCATTGGAGAACATGCCGCGCAGTTT 95278 Query 410 CTTGAACAT 418 ||||||||| Sbjct 95277 CTTGAACAT 95269 >seq308 Length=23006 Score = 174 bits (192), Expect = 4e-41 Identities = 281/406 (69%), Gaps = 15/406 (4%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||| || | |||||||||||||| |||||||| |||||||| ||||| | Sbjct 5838 CGATCAGGAAGACGTGGGACGCACCGGCGCCAAGCGCCGATTCGCGGATGGCGCGACGTT 5897 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | ||||||||||| ||| || ||||| | | | || ||||||||| ||| | Sbjct 5898 CAACCTGGGTGGAGCCGCAGGGTACGCACACGATGATGCGCGGGCTGGGCGCCAGCATGT 5957 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 || ||| ||| || |||||| | | ||||||| ||| ||| ||||||||| Sbjct 5958 TGCGGGGGTGCACCATGCGGATGAACTGTTTGAGCATCTGTTCGGTGACCGTGAAGTCGG 6017 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| |||||||| ||||| || || ||||| | || ||||| || || || |||| Sbjct 6018 CGATGACGCCGTCCTTCATGGGCCGGATGGCCTCGATGTTGCCGGGCACTCGACCAAGCA 6077 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTC------- 293 | ||||||| ||| ||||||||| || | ||| || || || | | Sbjct 6078 TCTGCTTGGCTTCGTGGCCGACGGCCTGGA---TGATCTTTTTGCCGTGAGGCCCGCCTT 6134 Query 294 -----CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAA 348 || || || || || || ||||||| || ||||| || |||| ||||||| Sbjct 6135 CATGACGGATTGCGACCACGGAGGGCTCATCGAGCACGATGCCCTTGCCGCGGACGTAAA 6194 Query 349 TAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394 | || || ||||| || || ||||| || | | |||||||||||| Sbjct 6195 TCAGCGTATTGGCGGTACCGAGGTCGATCGCCATATCGCTGGAAAA 6240 >seq7309 Length=387 Score = 167 bits (184), Expect = 6e-39 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 21 GCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGACTTGCAC 80 ||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 242 GCACCTGCGCCCAGCGCCGATTCACGGATCGCACGACGCTCCACCTGGGTGGAGCCGCAA 183 Query 81 GGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTGTTG 140 || ||||| || | | ||||||| || | | || || | ||||| ||| || | Sbjct 182 GGTACGCAAATGATGATACGAGGGGAAGGTTTGAAGAGTTTGGTGTCGTGCACCATGCGG 123 Query 141 ATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTCATC 200 ||||| | || ||||| | |||| ||| | |||||||||||||| |||||||||||| Sbjct 122 ATGAACTGCTTGAGCATTTGCTCGGTAACGGTAAAGTCGGCGATCACACCGTCTTTCATC 63 Query 201 GGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCG 260 || ||||| || | |||||||| ||| ||| ||||| ||||||| || | ||| Sbjct 62 GGGCGAATCGCCTCGATATTGCCCGGTACCTTGCCCAGCATCTGCTTGGCTTCCTTACCG 3 Query 261 AC 262 || Sbjct 2 AC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353460213728