Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq291 192 1e-46 seq242 187 6e-45 seq160 176 1e-41 seq994 149 1e-33 seq553 138 3e-30 seq1610 114 3e-23 >seq291 Length=3003 Score = 192 bits (212), Expect = 1e-46 Identities = 291/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 1974 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 1915 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | | || |||||||| | Sbjct 1914 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTAT-CGTTACTCATGTC 1856 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 1855 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1798 Query 177 CGACGCTCCCCTACCCAACCACAC--AGGTTG---CCACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| | |||| || |||||||| | || || || Sbjct 1797 GAACGCTCCTCTACCGCATCACCCGAAGGTGATACCCGTAGCTTCGGTGTATGGTTTGAG 1738 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||| Sbjct 1737 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAG 1678 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 1677 GGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTT 1618 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 1617 AACCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1573 >seq242 Length=118535 Score = 187 bits (206), Expect = 6e-45 Identities = 290/404 (72%), Gaps = 13/404 (3%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| | || || ||| | | | | Sbjct 114450 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 114509 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCA 122 ||| ||||||| ||||| ||| || ||||| | ||||||||||| | ||| Sbjct 114510 GAAACCTTGGACTTACGGCGAGGGGGCTTTTCACCCCCTTTATCGCTACTCATGTCAGCA 114569 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | | || | || |||| | || ||| || Sbjct 114570 TTCGCACTTCTGAT-ACCTCCAGCAGCCTTT-ACAAGCCACCTTCGCAGGCTTACAGAAC 114627 Query 181 GCTCCCCTACC-CAACCACACAGGTTGC-----CACAGCTTCGGCGGATAACTTAAGCCC 234 |||| |||||| | ||| | ||| | ||||||||| || |||| |||| Sbjct 114628 GCTCTCCTACCGCGTGCACTAAAAGTGCACACCCGCAGCTTCGGTTTATCGCTTA-GCCC 114686 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | | ||| || |||||||||||||||| ||||| |||||| Sbjct 114687 CGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGAT 114746 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||||||||| |||||| || |||| || ||||||||| || Sbjct 114747 GGCTGCTTCTAAGCCAACCTCCTGACTGTCTATGCCTTCCCACTTCGTTTCCCACTTAG- 114805 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||| ||||||||| | |||||| ||||||||||| Sbjct 114806 CGATAATTCGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 114849 >seq160 Length=64135 Score = 176 bits (194), Expect = 1e-41 Identities = 289/406 (71%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 |||||||| || ||| |||||||||||| ||||||||||| | || || ||| ||| Sbjct 3821 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 3762 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 3761 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 3702 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 3701 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 3643 Query 178 GACGCTCCCCTACC-CAACCACACAGGT-TGC-CAC----AGCTTCGGCGGATAACTTAA 230 ||||||| ||||| | || | | | ||| ||| |||||||| | |||| Sbjct 3642 AACGCTCCTCTACCGCGTACATATAAATATGCACACCCCAAGCTTCGGTTCACTGCTTA- 3584 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| || || || ||| || ||| ||||||||||||||||||| ||||| || Sbjct 3583 GCCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 3524 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||| Sbjct 3523 GGGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACT 3464 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || | || ||| ||||||||| | |||||| ||||||||| Sbjct 3463 TAGCAGTGAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 3418 >seq994 Length=2704 Score = 149 bits (164), Expect = 1e-33 Identities = 108/125 (86%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||| Sbjct 359 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGAAGATTAGCTTGACC 418 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| |||| ||||| | ||| ||| ||||| ||||||||||||||| Sbjct 419 CTGGAACCCTTGGTCTTTCGGAGGACGTGTTTCTCACACGTCATTCGCTACTCATGCCTG 478 Query 121 CATTC 125 ||||| Sbjct 479 CATTC 483 Score = 114 bits (126), Expect = 3e-23 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC-CACTTA 363 |||||||||||||||||||| | ||||||||||||||||||||||| || ||| | ||| Sbjct 710 AAGCCAACCTCCTGGTTGTCAAGGCAACTCCACATCCTTTCCCACTTAG-CACGCGCTTT 768 Query 364 GGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| |||||| || || |||||| ||||||||||||| Sbjct 769 GGGACCTTAGTTGGTGGTCTGGGTTGTTTCCCTCTCG 805 >seq553 Length=5624 Score = 138 bits (152), Expect = 3e-30 Identities = 151/197 (77%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| |||||||| | | |||||| |||| | |||||| || ||| || ||| | Sbjct 3581 CCATAGCTTCGGTGTACTACTTAATGCCCGTTT-ATTATCCATGCACGATCGCTCGACTA 3523 Query 267 GTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||| ||||||||||||| || || ||||||||||||||||||| |||| | ||||| Sbjct 3522 GTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCT 3463 Query 326 ACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 | |||| ||| || || | | ||| ||| |||| ||| |||||||||||| ||| Sbjct 3462 ATGCAATCGCACCTCGTTAGTTCAACTTAGTAGTAACTTGGGGACCTTAGCTGATGGTCT 3403 Query 384 GGGCTGTTTCCCTCTCG 400 ||| | ||||||||||| Sbjct 3402 GGGTTCTTTCCCTCTCG 3386 >seq1610 Length=2511 Score = 114 bits (126), Expect = 3e-23 Identities = 295/454 (65%), Gaps = 58/454 (13%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| ||||| | Sbjct 2039 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 2098 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| || | || |||||||| | Sbjct 2099 CAGGAACCCTTGGACTTTCGGCGAGGGAGTCTCTCACTCCCTTTATCGTTACTCATGTCA 2158 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAG-CTTCACCA-CTGACA 176 ||||||||||| | || | ||||| | | |||| | | ||||| | || ||| Sbjct 2159 GCATTCTCACTTCTGAT-ACCTCCAAGAGCCC-TCACGGGTCTCTCTTCAACGGCTTACA 2216 Query 177 CGACGCTCCCCTACCCAACC-----ACAC--AGGTTGC--------CACAGCTTCGGCGG 221 ||||||| ||||| || || | ||||| | ||||||||||| | Sbjct 2217 GAACGCTCCGCTACCACTCCCGGGAACCCGAAGGTTCCAAAGAATCCACAGCTTCGGTGT 2276 Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATT 276 || ||| ||||||| |||||| ||||||| | | ||| |||||||||||| || Sbjct 2277 ATGGCTTTAGCCCCGGTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTT 2336 Query 277 ACGCACTCTTT--------------------------------CAAGGATGGCTGCTTCC 304 |||| ||||| |||||| Sbjct 2337 ACGCTTTCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTCT 2396 Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364 |||||||| |||||||||| | | | | |||||||||||||||| || || |||||| Sbjct 2397 AAGCCAACATCCTGGTTGTTTTGGGATCCTCACATCCTTTCCCACTTAGCCATAACTTAG 2456 Query 365 GGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||||| || || || ||| |||| |||||| Sbjct 2457 GGACCTTAGATGGTGGTCAGGGTTGTTGCCCTCT 2490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177478389248