Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq552 221 2e-55 seq242 212 1e-52 seq160 203 5e-50 seq2145 190 3e-46 seq553 190 3e-46 seq5829 185 1e-44 seq2325 141 2e-31 seq4 100 5e-19 >seq552 Length=1692 Score = 221 bits (244), Expect = 2e-55 Identities = 218/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| Sbjct 682 CCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCCACTGGTGT 741 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | ||||||||||||||||||||||||||| | |||||| ||||| | || Sbjct 742 TCCTTCCTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCTACCATAC 801 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||||| ||||||| |||||||||| | ||||||||| ||| Sbjct 802 TCTAGCTCGTCAGTTTTGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCAACT 861 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | || ||||| ||| |||||| |||| ||| |||| |||||||||| ||| | Sbjct 862 TAACGAACCACCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCTG 921 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||| ||||||||| |||||||| Sbjct 922 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 963 >seq242 Length=118535 Score = 212 bits (234), Expect = 1e-52 Identities = 221/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| |||| | | |||||||||| ||||| Sbjct 117227 CCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGGAGGCTGCCTTCGCCATCGGTGT 117286 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| | ||||| ||| Sbjct 117287 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCACCTCCCTCTGACACAC 117346 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||| |||||||| ||| ||| | | |||||||||| || Sbjct 117347 TCTAGCTCGGTAGTTAAAAATGCAGTTCCAAAGTTAAGCTCTGGGATTTCACATCTTTCT 117406 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || |||||| | | | |||||| |||| ||| |||| |||||||||| |||||| Sbjct 117407 TTCCGAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACG 117466 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 117467 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTGCAGGTA 117516 >seq160 Length=64135 Score = 203 bits (224), Expect = 5e-50 Identities = 219/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||||| |||||| | | |||||||||| | ||| Sbjct 1153 CCCACGCTTTCGTGCCTCAGTGTCAGTGTTGGTCCAGGTAGCTGCCTTCGCCATGGATGT 1094 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| |||||||| | ||||| | ||| Sbjct 1093 TCCTCCCGATCTCTACGCATTTCACTGCTACACCGGGAATTCCACTACCCTCTACCACAC 1034 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||| || | |||| ||||||||||| | ||||||| | |||| Sbjct 1033 TCTAGTCGCCCAGTATCCACTGCAATTCCCAGGTTGAGCCCAGGGCTTTCACAACAGACT 974 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || ||||| | | |||||| |||| ||| |||| |||||||||| ||| || Sbjct 973 TAAACAACCACCTACGCACGCTTTACGCCCAGTAATTCCGAGTAACGCTTGCACCCTTCG 914 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 913 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTA 864 >seq2145 Length=12713 Score = 190 bits (210), Expect = 3e-46 Identities = 170/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43 CGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC 102 ||||||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||| Sbjct 12713 CGCCTTCGCCACTGGTGTTCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTC 12654 Query 103 CGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCA 162 | | |||||| | |||||||| | |||| ||||| |||| ||||||||||| Sbjct 12653 CACTCACCTCTCTCGAACTCAAGACTACCAGTATCAAAGGCAGTTCCGGGGTTGAGCCCC 12594 Query 163 TAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 | |||||| ||||||| |||||||| || |||||| |||| |||||||| | Sbjct 12593 GGGATTTCACCCCTGACTTAATAGTCCGCCTACGTGCGCTTTACGCCCAGTAAATCCGAA 12534 Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 |||||| ||| ||| ||||||||||||||||| Sbjct 12533 CAACGCTAGCCCCCTTCGTATTACCGCGGCTGC 12501 >seq553 Length=5624 Score = 190 bits (210), Expect = 3e-46 Identities = 223/295 (76%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | || || || | |||||||| | ||||| Sbjct 1082 CCCACGCTTTCGTGCCTCAGCGTCAATAACACCATAGTAAGCTGCCTTCGCAATCGGTGT 1023 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACA---CACGGAATTCCGATTGCCTCTCCAG 117 || ||||||| ||||||||||||||| ||| |||||| | ||||| | Sbjct 1022 TCTGTGACATATCTATGCATTTCACCGCTACTTGTCAC---ATTCCGCCTACCTCTAGTG 966 Query 118 CACTCAAGAAAAACAGTTTCAAATGCAG-GCTATGGGTTGAGCCCATAGT-TTTCACATC 175 | ||||| | |||| |||| ||| || |||| ||||||| | || |||||| | Sbjct 965 TATTCAAGCTCATCAGTATCAAGGGCACTGCGATGG-TTGAGCC-ACCGTCTTTCACCCC 908 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 |||||| |||||||| | ||||||| ||||||||||||||||||||||||| | Sbjct 907 TGACTTAATAAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGGATC 848 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 847 CTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTA 793 >seq5829 Length=272 Score = 185 bits (204), Expect = 1e-44 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||| Sbjct 28 CCCACGCTTTCGTTCCTCAGCGTCAGTTACTGCCCAGAGACCCGCCTTCGCCACCGGTGT 87 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| |||||||| | || || ||| || Sbjct 88 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGTCTCCCCTGCAGTAC 147 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | || || |||| || | ||||||| | ||||||||| ||| Sbjct 148 TCAAGTCTGCCCGTATCGCCTGCAAGCCAGCAGTTGAGCTGCTGGTTTTCACAAACGACG 207 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||| |||| ||| |||||| ||||||||| |||||| Sbjct 208 CGACAAACCGCCTACGAACTCTTTACGCCCAGTAATTCCGGACAACGCTTGCACCCTACG 267 Query 241 TATTA 245 ||||| Sbjct 268 TATTA 272 >seq2325 Length=420 Score = 141 bits (156), Expect = 2e-31 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| |||||| |||||| ||||||||||| |||||||| || || || | ||| Sbjct 196 TTCCTCCTGATATCTGCGCATTCCACCGCTACACCAGGAATTCCAATCTCCCCTACCGCA 137 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || | || | | ||||||| ||||||||| | ||||||| | ||| Sbjct 136 CTCTAGTCTGCCCGTACCCACTGCAGGCCGGAGGTTGAGCCTCCGGATTTCACAGCAGAC 77 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 | | |||||||| || |||||| |||||||| |||||||||||||||| ||||| Sbjct 76 GCGACAAACCGCCTACGAGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCGCCCTAC 17 Query 240 GTATTACCGCGGCTGC 255 |||||||||||||||| Sbjct 16 GTATTACCGCGGCTGC 1 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| ||||||| |||||||||||||||| | |||| ||| |||||||||| ||||| Sbjct 295 CCCACCCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAGATCTGCCTTCGCCATCGGTGT 236 Query 61 TCC 63 ||| Sbjct 235 TCC 233 >seq4 Length=49023 Score = 100 bits (110), Expect = 5e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGC 249 ||||||| |||||||| |||| | | || |||| ||||||| ||| ||||||||||| Sbjct 23160 GCCTACATACCCTTTACGCCCAGTCCTTACGAATAATGCTTGCCCCCTCCGTATTACCGC 23101 Query 250 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||| ||||||||| ||||| ||| Sbjct 23100 GGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 23068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828717084517