Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq242 181 7e-44 seq1610 127 1e-27 seq160 113 3e-23 seq553 111 1e-22 seq291 84.2 2e-14 seq4 78.8 7e-13 >seq242 Length=118535 Score = 181 bits (200), Expect = 7e-44 Identities = 124/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| Sbjct 113400 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 113459 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| ||| || | |||| |||| || |||||||| ||| |||||||||||||| Sbjct 113460 CTTTCGCACCTGTTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTAT 113519 Query 121 CACTACGATTTCCGACCGTA 140 || |||||||||||||||| Sbjct 113520 CAGCACGATTTCCGACCGTA 113539 >seq1610 Length=2511 Score = 127 bits (140), Expect = 1e-27 Identities = 113/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1068 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 1127 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| Sbjct 1128 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACT-C 1186 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 1187 GACGACCGATTTCCGACCG 1205 >seq160 Length=64135 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| | ||| Sbjct 4878 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTA 4819 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||| | ||||| | || | ||| ||| |||||||| ||| |||| |||||| Sbjct 4818 GTTTCCTACCTGCTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCAC 4762 >seq553 Length=5624 Score = 111 bits (122), Expect = 1e-22 Identities = 113/142 (80%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 4824 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGT 4765 Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT- 118 |||||| |||||| |||| ||| ||| || ||||||| ||| ||| |||||||| Sbjct 4764 CTTTCGACCCTGCTCGGCTTGTCTGC-CTCACAGTCAAGCAAGCTTATGCTATTGCACTC 4706 Query 119 ATCACTACGATTTCCGACCGTA 140 ||| |||| || || | |||| Sbjct 4705 CTCA-TACGGTTACCAAGCGTA 4685 >seq291 Length=3003 Score = 84.2 bits (92), Expect = 2e-14 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 40 CCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGC 99 |||||||||||||| ||||| |||||| | |||||| | ||| ||||||| |||||| Sbjct 2997 CCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGC 2938 Query 100 ACACTTTTGCCATTGCACTATCACTAC-GATTTCCGACCG 138 | |||||||| || ||| | || || |||||||||||| Sbjct 2937 GCGCTTTTGCCTTTATACTCT-ACGACCGATTTCCGACCG 2899 >seq4 Length=49023 Score = 78.8 bits (86), Expect = 7e-13 Identities = 89/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| |||||| || ||||| || | | |||||||||||| | Sbjct 36212 TACCTTTTATCCGTT-AGCGATCACCTTTCCACACAGAATGATCGGATCACTATGCTCGA 36154 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||| | | |||| ||| || ||||||| |||||||||||| |||| Sbjct 36153 CTTTCGTCTCTGATTGATTTGTATATCTTTCAGTCAAGCAAACTTTTGCCATTACACT 36096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351965920900