Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq242 192 6e-47 seq160 159 3e-37 seq1610 123 2e-26 seq553 120 3e-25 seq291 116 4e-24 >seq242 Length=118535 Score = 192 bits (212), Expect = 6e-47 Identities = 136/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 113412 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTG 113471 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| |||| |||| ||||||||| |||||||||||||||||| | |||||| || Sbjct 113472 TTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAGCACGATTTC 113531 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 113532 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 113567 >seq160 Length=64135 Score = 159 bits (176), Expect = 3e-37 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||| Sbjct 4866 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 4807 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || ||||| ||| |||||||||| ||||||||| |||||| | | ||||||| Sbjct 4806 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 4747 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | | ||| ||||||| |||||||||||| Sbjct 4746 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 4711 >seq1610 Length=2511 Score = 123 bits (136), Expect = 2e-26 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 1080 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1139 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | |||| || Sbjct 1140 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACCGATTTC 1199 Query 144 CGACCG 149 |||||| Sbjct 1200 CGACCG 1205 >seq553 Length=5624 Score = 120 bits (132), Expect = 3e-25 Identities = 122/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||| Sbjct 4811 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 4752 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATGT 142 ||| ||| ||| ||||||||| ||||||||| |||||||| |||| ||| | Sbjct 4751 TCGGCTTGTCTGCCTCACAGTCAAGCAAGCTTATGCTATTGCACT--CCTCATACGGTTA 4694 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | ||| | |||| ||||| | ||||||||| Sbjct 4693 CCAAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTA 4657 >seq291 Length=3003 Score = 116 bits (128), Expect = 4e-24 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46 CAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGT 105 ||||||||||||||||||| ||||| |||||| |||||||||| ||| ||||||||| Sbjct 3002 CAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGT 2943 Query 106 CAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTC 165 ||||| |||| |||| || ||| | |||| |||||||| | ||| |||||| Sbjct 2942 CAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTCCGACCGGTCTGAGCGCACCTTC 2883 Query 166 GTGCTCCTCCGTTA 179 || ||||||||||| Sbjct 2882 GTACTCCTCCGTTA 2869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473552619724