Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq553 316 3e-84 seq160 291 1e-76 seq242 269 4e-70 seq1965 259 8e-67 seq1610 165 1e-38 seq4 143 4e-32 >seq553 Length=5624 Score = 316 bits (350), Expect = 3e-84 Identities = 229/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 5150 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 5091 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 5090 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 5031 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 5030 CCCCACTCAAAATTCCTACGCCCACAACAGATAGGGACCGAACTGTCTCGCGACGTTCTG 4971 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||| Sbjct 4970 AACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 4911 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 4910 CCCAGGATGTGACGAGCCGACATCG 4886 >seq160 Length=64135 Score = 291 bits (322), Expect = 1e-76 Identities = 229/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| | Sbjct 5213 GAGGCGCGCTTCCCGCTTAGATGCTTTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 5154 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 5153 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 5094 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| | Sbjct 5093 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 5034 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||| Sbjct 5033 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 4974 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || |||||||||||| Sbjct 4973 GACTACAGCCCCAGGATGTGATGAGCCGACATCG 4940 >seq242 Length=118535 Score = 269 bits (298), Expect = 4e-70 Identities = 218/261 (84%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||| ||||| |||||||| ||| || |||| |||||| Sbjct 113079 GCTTAGATGCCTTCAGCGGTTATCTCTTCCGTACTTAGCTACCCGGCAATGCCATTGGCA 113138 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134 ||||| ||| |||||||||| ||||| ||||||||||||||||| | || ||||| Sbjct 113139 TGACAACCGGTACACCAGAGGTACGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCC 113198 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||| | ||| ||||||||| | |||||||||| ||||||||| ||||||| | |||| Sbjct 113199 -GTCAAGTATCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 113257 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 113258 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 113317 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 113318 GGATGAGATGAGCCGACATCG 113338 >seq1965 Length=710 Score = 259 bits (286), Expect = 8e-67 Identities = 209/253 (83%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| |||| Sbjct 458 GCTTAGATGCTTTCAGCGGTTATCTATTCCGAACATAGCTACCCGGCAATGCCACTGGCG 517 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 518 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 577 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct 578 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 637 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||||||| || |||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 638 AGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTTCAGCCCCAG 697 Query 256 GATGAGACGAGCC 268 |||| || ||||| Sbjct 698 GATGTGATGAGCC 710 >seq1610 Length=2511 Score = 165 bits (182), Expect = 1e-38 Identities = 139/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| || Sbjct 706 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 765 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||| ||||| ||| |||||||| | ||||||||||||||||||||||| Sbjct 766 TATGCGGCTGGCGCCACAACAGGTCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 825 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAAC 173 | |||||| |||| |||| ||||||| |||||| | |||||||||||||| Sbjct 826 AGGGACAGATCCTGTCAATATTCCTACACCCACGGCAGATAGGGACCGAAC 876 >seq4 Length=49023 Score = 143 bits (158), Expect = 4e-32 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||| ||||| ||| | |||||||||||||||| | |||| | ||| | Sbjct 37710 CACCAGCGGTTTATCCTCCTCGGTCCTCTCGTACTAGAGTCAGCATTTTATTTTTTTAGT 37651 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 || | |||||||||||||||||||| ||||||||| |||||||||| ||| || Sbjct 37650 TATAACAGTA--GATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACC 37593 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 |||||| | ||||| | |||||||||||||||||||||||||||||| || |||| Sbjct 37592 ACTTTAAACCGTGAACACCGGTACCCTTGGGACCTACTTCAGCCCCAGGATGTGATGAGC 37533 Query 268 CGACATCG 275 |||||||| Sbjct 37532 CGACATCG 37525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780721886572