Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq2138 684 0.0 seq54 210 8e-52 >seq2138 Length=4397 Score = 684 bits (758), Expect = 0.0 Identities = 496/570 (87%), Gaps = 4/570 (1%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| ||| |||| ||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 1515 TCGACCATCGTGTTCTGGTCGTTCCGGGTCATGGTGGGCCTGGGCTTCCTGATGATCTTC 1456 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 ||||| || |||||||| ||||| |||||| |||||||||||||||||||||||||||| Sbjct 1455 ACCGGCCT-GTTCAGCCTCTGGCT-GCGCCGTGGCGACAAGATGTACACGTCCAAGCCGT 1398 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1397 TCCTGTACCTGGCGCTGTGGATGGGCCCGTCCGGCCTGATCGCGATTCTCGCCGGCTGGT 1338 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| || |||||||| |||||||||||||||||||| |||||||||||||| || | Sbjct 1337 TCACCACCGAGATCGGCCGACAGCCGTGGGTGGTCTACGGGCTGATGCGCACGGCAGACG 1278 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 | || ||| || || | | |||||||| |||||| |||||||||| |||||||||| Sbjct 1277 CCTCGTCCAACCACAGTTTTGCGCAGATGAGCATTACGTTGGTGTTGTTTGTGGTGGTGT 1218 Query 304 ACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGC 363 |||||||||||||||| || || |||||||||||||||||||||||||||||||| || Sbjct 1217 ACTTCGCGCTGTTCGGCGCGGGCCTGGGCTACATGATGCGCCTGGTGCGCAAAGGGCCTG 1158 Query 364 AGACCCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC 423 |||||||||| || ||||| ||||||||||| ||||| ||||||||||| || || | Sbjct 1157 TGACCCACGAAAGCACCGAGCCCACCCACGGTGGCCCTGGGCAGAAACGCACACCGGCGC 1098 Query 424 GTCCGTTGTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGG 483 |||||||||| || || ||||| | ||||| ||| ||| | ||| | | |||||| Sbjct 1097 GTCCGTTGTCGGCGGCTGATGACAGTGCCGATGCCGATCACGGCGACACCTTGAACAAGG 1038 Query 484 GGCATTGAG--ATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCA 541 || | |||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1037 GGAACTGAGCCATGGGTATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTTCGGCA 978 Query 542 TCATGATGTACGTGGTCATGGACGGCTTCG 571 |||||||||||||||||||||||||||||| Sbjct 977 TCATGATGTACGTGGTCATGGACGGCTTCG 948 >seq54 Length=176950 Score = 210 bits (232), Expect = 8e-52 Identities = 405/581 (70%), Gaps = 31/581 (5%) Strand=Plus/Plus Query 7 ACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATC--TTCA 64 ||||| | |||| ||||||| || || | || ||| | |||| ||||||||| || Sbjct 153466 ACCGTGGTGTTCTGGTCGTTTCGCGTGATGGCCGGGCTGGGCACGCTGATGATCGCTTTG 153525 Query 65 CCGGTCTAGTTCAGC-CAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 ||| || | || | |||| |||| || ||| |||| ||||| ||| | | | Sbjct 153526 GCGGCCTGG----GCGCTGTGGGC-GCGCTGGCGCGGCAAGCTGTACCAGTCGCGGGCCT 153580 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 | | | | | ||| |||||||||| |||||||| || | ||||| || || ||||||| Sbjct 153581 TGCAGCGCTTTGCGCTGTGGATGGGGCCGTCCGGCCTGGTGGCGATCCTGGCGGGCTGGT 153640 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||| || |||||||| ||||||||| | ||||||||| ||||||||||||| |||| Sbjct 153641 ATGTCACCGAGATCGGCCGCCAGCCGTGGATCGTCTACGGCGTGATGCGCACGGCCGATG 153700 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 | || | | ||| || | | | ||||| | ||||||| | ||||||||||||||| Sbjct 153701 CCGCCACGCGCCATGGCATCGGCGAACTGACGCTGACGCTGGCGCTGTTCGTGGTGGTGT 153760 Query 304 AC---TTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTC 360 || |||| ||||||| ||||| || |||||| |||||||| | |||| |||| Sbjct 153761 ACCTGTTCG---TGTTCGGCGCCGGCGTGTCGTACATGCTGCGCCTGATCCGCATGGGTC 153817 Query 361 CGCAGACCCACG-AAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCA 419 | || || || ||| ||| ||| ||| || || ||| ||| || || || Sbjct 153818 C-CACGCCGGCGCCTGGCCATGCGCCCCTGTCCGGCGGCCCGGGC--GAACCG--CGTCA 153872 Query 420 GCC----CGTCCGTTGTCTGCCGC--CGATGATGGCAGCGATGACGACCACACCCACATC 473 || || ||| |||| ||||| | | ||| | | || || | | ||| | Sbjct 153873 ACCTTCGCGGCCGCTGTCGGCCGCCTCCACCTCGGCGGATGTTCCGTCCGC-CTCAC-GC 153930 Query 474 CAGCACAAGGG-GCAT--TGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCAT 530 | |||||| || | | |||||||| |||||| | ||||| ||||||| ||||| Sbjct 153931 AACGCCAAGGGAGCCTGACGCCATGGGTATCGATCTTGCACTGATATGGGCCGTCATCAT 153990 Query 531 CATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 571 | | |||||| | |||||||| ||||| ||||||||||||| Sbjct 153991 CCTGTTCGGCGTGATGATGTATGTGGTGATGGACGGCTTCG 154031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1724621879904