Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq878 511 1e-142 seq116 127 4e-27 seq68 102 2e-19 >seq878 Length=51136 Score = 511 bits (566), Expect = 1e-142 Identities = 325/353 (92%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 47067 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAGCTGGGGGAAGGCCGCGAAGCCATCAT 47008 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 47007 CGCCGTGACCATCCCCGAGAAACCGGGCAGCTTCAAGGCCTTCTGCGAGGCCGTGGGCAA 46948 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||||||||||||||||||||||||||| | ||||||||| | ||||||||||| ||||| Sbjct 46947 GCGCCAGATCACCGAATTCAACTACCGCTACCACTCCGGGCGTGAGGCGCACATTTTTGT 46888 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||||||||||||||| || | |||||| ||||||||||||||||||||||| ||| Sbjct 46887 CGGCGTGCAGACCCACCCGGAAAACGACCCGCGCAGCGCGCTGATCGCCAGCCTCACCAG 46828 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 |||||||||||||||||||||||||| || || || ||||||||||||||||||||||| Sbjct 46827 CCAGGGTTTCCCGGTGCTGGACCTGACGGAAAACGAACTGGCCAAGCTGCACATCCGCCA 46768 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 ||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 46767 TATGGTCGGCGGCCATGCGGCGCACGTCAGCGACGAGGTGGTGTTCCGCTTCG 46715 >seq116 Length=97025 Score = 127 bits (140), Expect = 4e-27 Identities = 251/362 (69%), Gaps = 21/362 (6%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||| ||||| || |||||||| | || ||| |||||||| | | Sbjct 35279 CGACCGCCTGCGCTTCGTGGCCGAACGCGCCGAAGTCGGCGAAATGCGCGAAGCCGTGTT 35220 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCG-TTCTGCGAGGCCGTGGGCA 119 |||||| ||||| ||||| ||| |||||||||| | || |||||||| |||||| Sbjct 35219 CGCCGTCACCATGCCCGAACAGCGCGGCAGCTTCC-GCCGCTTCTGCGAACTGGTGGGCG 35161 Query 120 AGCGCCAGATCACCGAATTCAACTACCG--TTTCC-ACTCCGGCAGCGAGGCGCACATCT 176 ||||| | ||||||||||||||||| ||||| | |||| | || || || | | Sbjct 35160 AGCGCAGCGTGACCGAATTCAACTACCGCATTTCCGATTCCGACCGC---GCTCATGTGT 35104 Query 177 TTGTCGGCGTGCAGACCCACCCCGAC-ACCGACCCCCGCAGCGCGCTGATCGCCAGCC-- 233 | |||||| |||| | | | || | |||| ||| || ||||||||||| Sbjct 35103 TCGTCGGCCTGCA-AGTCTCGTCGCCGGCCGAACCCGACA------AGATCGCCAGCCAC 35051 Query 234 --TGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCA 291 | ||| || |||||| |||||||||||| | | || |||||||| || Sbjct 35050 TTTCGCCG-CCACGGTTTCGACACGCTGGACCTGACGCATGACGAAATGGCCAAGACCCA 34992 Query 292 CATCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTT 351 | | ||||| ||||||||||| | | || |||| | || | || | ||| |||||| Sbjct 34991 CTTGCGCCACATGGTCGGCGGGCGTTCGACGCAGGCGCGCGACGAGCTTCTGTACCGCTT 34932 Query 352 CG 353 || Sbjct 34931 CG 34930 >seq68 Length=246065 Score = 102 bits (112), Expect = 2e-19 Identities = 243/360 (68%), Gaps = 17/360 (5%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||||||||| |||||||| ||||| || | || |||| ||||| ||| || | Sbjct 11441 CGACCGCCTGCGGTTCGTGGCGGACCGCGCGGAAGTAGGCGAAGCGCGCGAGGCGGTCTT 11382 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 || ||||| | ||||| | | ||||||||| |||||| | | | ||| | Sbjct 11381 TGCGGTGACGGTGCCCGAAGAACGCGGCAGCTTTCGCCGGTTCTGTGGCGTGATCGGCCA 11322 Query 121 GCGCCAGATCACCGAATTCAACTACCG--TTTCCACTCCG-GCAGCGAGGCGCACATCTT 177 |||| ||||||| ||||||||||| || || | || ||| | || | |||||| Sbjct 11321 GCGCAGCGTCACCGAGTTCAACTACCGCATTGCCGATGCGCGCACC---GCCCGCATCTT 11265 Query 178 TGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGC-GCGCTGATC--GCCAGC-C 233 ||| | ||||||| | | | || | || ||| || |||| || || | Sbjct 11264 CGTCAGTGTGCAGA-----TCGGGCGTCG--CGGCGAAGCGGCCGAGATCATGCAGGCGC 11212 Query 234 TGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACA 293 ||||||| ||||||||| | || ||||||| | | || ||| | |||||| ||||| Sbjct 11211 TGACCGAACAGGGTTTCGCAGTCAGCGACCTGAGCCACAACGAGGTATCCAAGCAGCACA 11152 Query 294 TCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 ||||| | ||||| ||||| | || ||| | | || ||| |||||||||||| Sbjct 11151 TCCGCTACATGGTGGGCGGACGCTCGCCGCTGGCCGGCGGCGAACGCCTGTTCCGCTTCG 11092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027093921056