Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq1274 455 5e-126 seq39 152 9e-35 seq463 141 2e-31 seq4797 100 5e-19 seq2918 95.1 2e-17 >seq1274 Length=35339 Score = 455 bits (504), Expect = 5e-126 Identities = 278/294 (95%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2563 TCGAGCAACGCCAATAGACCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 2622 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2623 AGTGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 2681 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2682 TCCACGTTACCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCGAGCAGCTTG 2741 Query 181 CGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTG 240 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2742 CGCTTACGGCTGACGTCGCCGCCATAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTG 2801 Query 241 ACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 2802 ACGGAAGTCCGTGCAATGATCTGCCCGCCGATGGCGGCCTGGATCGCGACGTCG 2855 >seq39 Length=206917 Score = 152 bits (168), Expect = 9e-35 Identities = 154/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || ||||| ||||| | | ||||||||||| |||| || |||||||||| || || || Sbjct 137055 GCCAGGAATGCTTCCTGG-GGAATTTCCACCGTGCCGACCTGCTTCATGCGCTTCTTGCC 136997 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 |||||| ||||| || |||||||| ||| || | ||| ||||||||||| ||||| Sbjct 136996 GGCCTTCTGCTTTTCCAGCAGCTTCTTCTTGCGCGAGATGTCGCCGCCGTAGCACTTGGC 136937 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| |||||||| | || ||||||||| || |||||||| | |||| ||||| Sbjct 136936 CAGCACGTTCTTGCGCAGCGCCTTGACGTTTTCGCGGGCAATGATTTCGGCGCCGATGGC 136877 Query 276 GGCCTGGATCGCGACGTCG 294 |||||||||| |||||||| Sbjct 136876 GGCCTGGATCACGACGTCG 136858 >seq463 Length=128983 Score = 141 bits (156), Expect = 2e-31 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 ||||| || ||||||||||| | | || ||||||||| ||| || |||||||||| || Sbjct 108660 AGCACGGCCAGGAAGGCTTCCT-GCGGGATTTCCACGCGGCCAACCTGCTTCATGCGCTT 108602 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || |||| ||||| || | |||||| ||| || ||||| || || ||||| Sbjct 108601 CTTGCCTTCCTTCTGCTTTTCCAACAGCTTCTTCTTGCGCGAAACGTCGCCACCATAGCA 108542 Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCC 269 |||||||| |||||||| | | |||||||| | ||| || | ||||||||| ||| Sbjct 108541 CTTGGCCAGCACGTTCTTGCGCATCGCCTTGACCGTGGTGCGGGAGATGATCTGCGAGCC 108482 Query 270 AATGGCGGCCTGGATCGCGACGTCG 294 | |||||||||||| || |||||| Sbjct 108481 GACGGCGGCCTGGATGGCCACGTCG 108457 >seq4797 Length=3352 Score = 100 bits (110), Expect = 5e-19 Identities = 120/161 (75%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 138 CTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTC 197 ||||||||| || || || |||| |||||||| || ||||||||||| ||| | | ||| Sbjct 2202 CTTCATGCGCTTCTTGCCCTCCTTCTGCTTCTCGAGAAGCTTGCGCTTGCGGGTGATGTC 2261 Query 198 ACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGA-GGTC---CGCG 253 |||||||||||| ||||| || || | ||| | || || ||||| |||| || | Sbjct 2262 ACCGCCGTAGCACTTGGCGAGCACATCCTTGCGGATCGC----ACGGATGGTCTCGCGGG 2317 Query 254 CAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 | ||||| || | || || || |||||||||| || ||| Sbjct 2318 CGATGATGCGCGCACCGATCGCCGCCTGGATCGGCACCTCG 2358 >seq2918 Length=5121 Score = 95.1 bits (104), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCT 160 ||||||||| | | || ||||| || ||||| | || |||||| || || || ||| Sbjct 48 GAAGGCTTCCT-GCGGGATTTCGACCTTGCCGAACTGCCGCATGCGCTTCTTGCCTTCCT 106 Query 161 TTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTA 220 | ||||| || || ||||||||||| || ||||| ||||| |||||||| ||| | Sbjct 107 TCTGCTTTTCCAGAAGCTTGCGCTTGCGCGAGACGTCGCCGCCATAGCATTTTGCCGTCA 166 Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 ||| ||| | || ||| || || ||||| || | | ||||| ||||| |||| Sbjct 167 CGTCCTTGCGCAGGGCCGAGATGGTTTCACGCGCGATCACCGTGCCGCCGATGGCCGCCT 226 Query 281 GGATCGCGA 289 |||||| || Sbjct 227 GGATCGGGA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838313418432