Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq839 513 3e-143 seq1041 354 2e-95 seq35 163 6e-38 seq1573 91.5 3e-16 >seq839 Length=31020 Score = 513 bits (568), Expect = 3e-143 Identities = 343/382 (90%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60 |||| || |||||||||| |||||| ||||| ||||| ||| || ||||| ||||| | Sbjct 16749 CGAGGGCGAAGAAGTGCAGCATGCGCTCGGCGTCCAGTTGCTGATGGCGCTCAAGGTAAC 16808 Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120 |||||||||||||||||||||||| |||||| |||| || ||||| || || ||||||| Sbjct 16809 TGTCCAGGGTGCCGCTGCTGAGCAGCGACATGGCCAACTCGTCCAGCCCGTCACTGCGCC 16868 Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 16869 CGGCCTGGGGCATCAACGACAGCGAATAACTGACTTCCAGCATGCGCGCCAGGTTCTCGG 16928 Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCA 240 | |||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| Sbjct 16929 CACGCTCCAGGTAACGGGACATCCAATACAGATCTGCGGCGGTTCTACTCAGCATACTCA 16988 Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300 |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || Sbjct 16989 GCCCTCCACCACCCAGGTGTCCTTGGTTCCGCCGCCTTGCGACGAGTTGACGATCAATGA 17048 Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360 |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 17049 GCCTTCGCGCAGTGCCACGCGGGTCAAGCCACCCGGCACCAGGCGGGTTTCCTTGCCCGA 17108 Query 361 GAGCACGAAGGGTCGCAAGTCG 382 ||||||||| ||||||| |||| Sbjct 17109 GAGCACGAACGGTCGCAGGTCG 17130 >seq1041 Length=92228 Score = 354 bits (392), Expect = 2e-95 Identities = 308/381 (81%), Gaps = 1/381 (0%) Strand=Plus/Plus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||||||||| | ||| ||| ||||| |||| | Sbjct 68177 AGGGCGAAGAAGTGCAGCAGGCGTTCGGCGTGCAGTTCACCGTGGCGCTCGCGGTAATCG 68236 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 || ||||||||| || | |||| || |||||||||||||| ||||||||||| ||||||| Sbjct 68237 TCGAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCATGCAGGCCATCGCCGCGCCCG 68296 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| |||||||||||| || ||||| || || ||||| || ||| Sbjct 68297 TCCTGGGGCATCAGCGACAGCGAATAACTGACATCGAGCATCCGCGCGAGGTTTTCCGCG 68356 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATA-CTCAG 241 ||||||||||| |||||||||||||||| ||| | || ||||||| || |||| ||| Sbjct 68357 CGCTCCAGGTAGCGCGACATCCAATACAAATCCGAGGCAGTTCTACTCAACATATTTCAA 68416 Query 242 CCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAG 301 |||| |||||||||||||| || || || ||||| || ||||||||||| ||||||||| Sbjct 68417 TCCTCGACCACCCAGGTGTCTTTAGTGCCGCCGCCCTGGGACGAGTTGACCACCAGCGAG 68476 Query 302 CCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAG 361 |||||| ||||||||| || |||| ||| |||||||||| |||||||||||||| Sbjct 68477 CCTTCCCGCAGCGCCACACGAGTCAGGCCGCCGGGCACCACACGGGTTTCCTTGCCTTGC 68536 Query 362 AGCACGAAGGGTCGCAAGTCG 382 ||||| || || |||| |||| Sbjct 68537 AGCACAAACGGGCGCAGGTCG 68557 >seq35 Length=166930 Score = 163 bits (180), Expect = 6e-38 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212 || ||||||||||| || ||||||||||||||| | ||| || ||||||| |||| Sbjct 12966 ACGTCCAGCATGCGGGCGGTGTTCTCGGCGCGCTCGATGTAGCGGCACATCCAGAACAGG 12907 Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCAC 272 | | || |||| | |||||| | | |||||| ||||||||||||||||| || | Sbjct 12906 TTGTCGGCGGTTCGGCTCAGCATCGTTATTCCTCCAGAACCCAGGTGTCCTTGGTGCCGC 12847 Query 273 CGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCAC 332 |||| || |||||| |||||||||||||| |||||||||||||| || ||| | Sbjct 12846 CGCCCTGGCTGCTGTTGACCACCAGCGAGCCTTCGGTCAGCGCCACGCGGCACAGGCCGC 12787 Query 333 CGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 ||||||| |||| | |||||||| | |||||| | || |||| |||| Sbjct 12786 CGGGCACGGTGCGGATGTCCTTGCCGCACAGCACGTACGGCCGCAGGTCG 12737 >seq1573 Length=12330 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297 |||| | || | |||||||||||||| || || || || || || ||||| || || Sbjct 4534 TCAGTCGTCGAGAACCCAGGTGTCCTTTGTCCCGCCTCCCTGGCTGGAATTGACAACGAG 4475 Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGC 337 ||||||||||||||||||||||||||||| ||| || ||| Sbjct 4474 CGAGCCTTCCTTCAGCGCCACGCGGGTCAGGCCGCCCGGC 4435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119884337600