Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq552 477 2e-132 seq160 437 2e-120 seq242 363 4e-98 seq553 224 2e-56 seq2145 138 3e-30 seq4 132 1e-28 >seq552 Length=1692 Score = 477 bits (528), Expect = 2e-132 Identities = 359/415 (87%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |||| Sbjct 1021 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 1080 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 1140 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| Sbjct 1141 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCC 1200 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || || ||||| ||||| | |||||||||||||||| || Sbjct 1201 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 1260 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | |||| |||||||||||||| |||||||| | |||||||||| | | | Sbjct 1261 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCCCACTACC 1319 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||| || ||||||||||||||||||| ||| ||| || |||||||| || Sbjct 1320 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 1376 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 --CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 1428 >seq160 Length=64135 Score = 437 bits (484), Expect = 2e-120 Identities = 350/417 (84%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| Sbjct 811 CTTTACAACCCGAAGGCCTTCTTCACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCAT 752 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 751 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 692 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 691 TGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCC 632 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||||||||||| | | || ||||| | | |||||||||||||||| ||| Sbjct 631 AACTAGCTAATCCGACATCGGCTCATCTATCCGCGCAAGGCCCGAAGGTCCCCTGCTT-- 574 Query 244 GTCTTGCGACG---TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 || ||| | |||||||||||||| |||||| |||||||||| | | | Sbjct 573 -TCACCCGAAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAA 515 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGA-AGCAGCAAGCTGCT 359 || || |||| | ||| ||||||||||||||||||| || | | | |||||||| || Sbjct 514 GGTAGATTCCGATGTATTCCTCACCCGTCCGCCACTCGCCACCCATAAGAGCAAGCT-CT 456 Query 360 TCCTGT--TACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||| | |||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 455 TACTGTGCTGCCGTTCGACTTGCATGTGTTAGGCCTACCGCCAGCGTTCACTCTGAG 399 >seq242 Length=118535 Score = 363 bits (402), Expect = 4e-98 Identities = 332/415 (80%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||| || |||||||| ||||||| |||||| || | || Sbjct 117566 GTGCTTTACAACCCGAAGGCCTTCATCGCACACGCGGGATGGCTGGATCAGGGTTTCCCC 117625 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 117626 CATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 117685 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||||||| |||||||| |||||||| |||||||||||| |||| ||| ||||||| Sbjct 117686 GTGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTCGCCTTGGTGAGCCGTTACCCC 117745 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| || | || || |||||| ||| | | ||||| || Sbjct 117746 ACCAACTAGCTAATCCGATATCGGCCGCTCTAATAGTGCAAGGTCTTGCGATCCCCTGCT 117805 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | | || |||||||||||||| || |||| || |||||||||| | | Sbjct 117806 TTCCCCCGTAGGGCG-TATGCGGTATTAGCTACGCTTTCGCGTAGTTATCCCCCGCTACT 117864 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 ||||| |||| | ||||||||||||||| ||||||||| || | || ||| | Sbjct 117865 AGGCACGTTCCGATACATTACTCACCCGTTCGCCACTCGCCACC--AGACCGAAG----T 117918 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || | ||||||||||||||||||| |||| | |||| ||||||||||||||| Sbjct 117919 CCGTGCTGCCGTTCGACTTGCATGTGTAAGGCATCCCGCTAGCGTTCAATCTGAG 117973 >seq553 Length=5624 Score = 224 bits (248), Expect = 2e-56 Identities = 307/423 (73%), Gaps = 28/423 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| |||| ||| || ||||| | ||||||||||||||| |||| || | |||| Sbjct 745 TTTACGACCCAGAGGGCTGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTCCCTCCAT 686 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 685 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 626 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| ||||||||||||||| | |||| |||||||||| |||||||| |||||||||| Sbjct 625 TGGGGGGTCATCCTCTCAGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCC 566 Query 184 AACTAGCTAAT----------CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-T 232 ||||||||||| |||||| || |||| ||| | | | || | Sbjct 565 AACTAGCTAATGACACGCATGCCCATC----TTAATCCTATAAATATTTGAACATTGGAT 510 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 || || || | ||||||||| ||| | |||| || ||||||| Sbjct 509 AATGCT-----ATCCTGTGTTTTTATGCGGTCTTAATCCGAATTTCTTCGGGCTATCCCC 455 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 || | ||| | ||| | | | |||| ||||||| ||||||| ||| ||| ||| Sbjct 454 CTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCCACT-TTCA--TAAGAAGC 398 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||| ||| | | |||||||||||||||| ||||||||||||| |||||||| || Sbjct 397 AAGCCTCTTAATCT---CGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCT 341 Query 412 GAG 414 ||| Sbjct 340 GAG 338 >seq2145 Length=12713 Score = 138 bits (152), Expect = 3e-30 Identities = 94/106 (89%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165 ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 12318 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTG 12259 Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCC 211 || |||| ||||||| ||||||||||||||| | ||| |||||| Sbjct 12258 GTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCC 12213 >seq4 Length=49023 Score = 132 bits (146), Expect = 1e-28 Identities = 129/164 (79%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| | || |||| |||| |||||||| |||||| ||||||||||||||||||| || Sbjct 23010 CACGTGATATTGCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGC--CC 22953 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | |||| ||||| | | ||| ||||| |||||||| |||||||| ||||||| ||| Sbjct 22952 ATTTTGAGT-TGGACTATATTTCAATTCCAATGTGGCTGATCATCCTCCCAGACCAACTA 22894 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||| ||| || | | |||| |||||| ||||||| ||||| Sbjct 22893 CGAATCATCGGCTTGTTAGGCCTTTACCCTTCCAACTACCTAAT 22850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222273762752