Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq160 322 1e-85 seq242 313 7e-83 seq552 293 7e-77 seq4 232 2e-58 seq553 223 1e-55 seq2145 118 3e-24 seq2325 91.5 4e-16 seq5829 77.0 1e-11 >seq160 Length=64135 Score = 322 bits (356), Expect = 1e-85 Identities = 286/363 (79%), Gaps = 26/363 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 616 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 675 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 676 AGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 735 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| ||||||||| |||| | ||||||| | || ||||| Sbjct 736 TGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATACCGCGTGGGTGAAGAAGG 795 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA----------------------- 379 ||||||||| ||||||| || | | | |||| || Sbjct 796 CCTTCGGGTTGTAAAGCCCTTTTGTTGGGAAAGAAAAGCAGTCGATTAATACTCGGTTGT 855 Query 380 --TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||||| | || |||| |||||||||| |||||||||||||||||||||||| Sbjct 856 TCTGACGGTACCCAAAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACG 915 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| |||||||||||||| |||| Sbjct 916 AAGGGTGCAAGCGTTACTCGGAATTACT-GGGCGTAAAGCGTGCGTAGGTGGTTGTTTAA 974 Query 498 GTC 500 ||| Sbjct 975 GTC 977 >seq242 Length=118535 Score = 313 bits (346), Expect = 7e-83 Identities = 280/353 (79%), Gaps = 26/353 (7%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || ||||||||||||||| |||||||||| ||||||||||||||| ||||| | ||| Sbjct 117763 TCGGATTAGCTAGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCGTAGCTGGTTTGA 117704 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 117703 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 117644 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| |||||||| ||| |||||| |||| | ||||||| ||||||||||| Sbjct 117643 GGGGAATTTTGGACAATGGGGGAAACCCTGATCCAGCCATCCCGCGTGTGCGATGAAGGC 117584 Query 344 CTTCGGGTCGTAAAGCTCTGT--------------CCTCAAGG---AA--------GATA 378 |||||||| ||||||| || | | ||| || || || | Sbjct 117583 CTTCGGGTTGTAAAGCACTTTTGGCAGGAAAGAAACGTCATGGGCTAATACCCCGTGAAA 117524 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 ||||||||| || || |||| |||||||||||||||||||||||||||||||||||| Sbjct 117523 CTGACGGTACCTGCAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 117464 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| || ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 117463 AGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 117412 >seq552 Length=1692 Score = 293 bits (324), Expect = 7e-77 Identities = 281/362 (78%), Gaps = 26/362 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| |||| ||||||||||||||| ||| | | ||| Sbjct 1219 GTCGGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 1160 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1159 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 1100 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 1099 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 1040 Query 343 CCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA--------- 378 |||||| | ||||||| || | |||||| ||| Sbjct 1039 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTAAATTAATACTTTGCTGT 980 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||| Sbjct 979 TTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 920 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| | |||||||||||| |||| Sbjct 919 GAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTCGTTAA 861 Query 498 GT 499 || Sbjct 860 GT 859 >seq4 Length=49023 Score = 232 bits (256), Expect = 2e-58 Identities = 246/319 (77%), Gaps = 9/319 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||| | ||||| ||| || |||| ||| ||| |||| | ||| |||| Sbjct 22850 ATTAGGTAGTTGGAAGGGTAAAGGCCTAACAAGCCGATGATTCGTAGTTGGTCTGGGAGG 22909 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||||||||| ||| | | |||||| ||| | || |||||||||||| Sbjct 22910 ATGATCAGCCACATTGGAATTGAAATATAGTCCAA-CTCAAAATGG--GCAGCAGTGGGG 22966 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| |||||| || |||| |||| |||||| | |||||| |||||| | Sbjct 22967 AATATTGGACAATGAGCGCAAGCTTGATCCAGCAATATCACGTGAGGGATGAAA----TA 23022 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | | ||||| |||| | | || |||||||||||| | || | || ||||||||||| Sbjct 23023 GAAT-GTAAACCTCTTTTATTAAAGAAGATAATGACAAGAATTAAAGAAGAAGCCCCGGC 23081 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||||| |||||||||||||||||||||||| ||||||| ||| |||| || || ||| | Sbjct 23082 TAACTTCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCAAGCATTATTCGTAAGGACT-G 23140 Query 468 GGCGTAAAGGGTGCGTAGG 486 |||||||||||| ||||| Sbjct 23141 GGCGTAAAGGGTATGTAGG 23159 >seq553 Length=5624 Score = 223 bits (246), Expect = 1e-55 Identities = 265/360 (74%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 548 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 607 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 608 TGAGAGGATGACCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 667 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA- 339 ||| ||||||||| |||||| || |||| |||| | |||||||| || || Sbjct 668 AGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTGCAGGAAGAC 727 Query 340 AGGCCTTCGGGTCGTAAA--GCT-----------------CTGTCCTCAAGGAAGATAAT 380 || ||| |||||||||| ||| || || | | | || | Sbjct 728 AGCCCTCTGGGTCGTAAACTGCTTTTATTCGGGAATAAACCTTTCTACGTGTAGGAAGCT 787 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 || |||| |||| ||| ||||||||| |||||||||||||||||||||||| || Sbjct 788 GAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 847 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | ||||||||||||| ||| | ||| ||||||||||||||| || || ||||||| Sbjct 848 GATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTC 906 >seq2145 Length=12713 Score = 118 bits (130), Expect = 3e-24 Identities = 169/236 (72%), Gaps = 19/236 (8%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATAC 80 ||||||| ||||||||||||||||||||| || || ||| | ||||| |||| | Sbjct 12101 GAGCGGCAGACGGGTGAGTAACGCGTGGG-AATCTACCCATCTCT-ACGGAATAACGCAT 12158 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| || ||||||||| ||||| | ||| | ||| |||| || | Sbjct 12159 GGAAACGTGTGCTAATACCG-----TATACGTCCTTCGGGAGAAAGATTTATCGGAGAT- 12212 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 |||| ||||||| ||||||||||||||| ||||| ||| ||||||| Sbjct 12213 ----------GGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAG 12262 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 ||||||||| |||| | |||||||| ||||| |||||| ||| ||||||||||| Sbjct 12263 GCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACG 12318 Score = 87.8 bits (96), Expect = 5e-15 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTG 480 ||||||||||||||||| |||||||||||||| | |||| ||||| |||||||||| | Sbjct 12501 GCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCA 12559 Query 481 CGTAGGTGGTTTCTTAAGTC 500 |||||| || | ||||||| Sbjct 12560 CGTAGGCGGACTATTAAGTC 12579 >seq2325 Length=420 Score = 91.5 bits (100), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTG 480 |||||||||||||||||||||| || ||||||||||||||||| | |||||||||| | Sbjct 1 GCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATTA-TTGGGCGTAAAGAGCT 59 Query 481 CGTAGGTGGTTT 492 |||||| ||||| Sbjct 60 CGTAGGCGGTTT 71 >seq5829 Length=272 Score = 77.0 bits (84), Expect = 1e-11 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 431 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 |||||||||||| || |||||| |||||||||||| |||||||||| || |||||| ||| Sbjct 272 TAATACGTAGGGTGCAAGCGTTGTCCGGAATTACT-GGGCGTAAAGAGTTCGTAGGCGGT 214 Query 491 TT 492 || Sbjct 213 TT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497445342848