Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq552 372 7e-101 seq160 352 7e-95 seq242 342 1e-91 seq553 298 1e-78 seq2325 242 9e-62 seq5829 239 1e-60 seq2145 226 7e-57 seq4 125 2e-26 >seq552 Length=1692 Score = 372 bits (412), Expect = 7e-101 Identities = 321/396 (81%), Gaps = 1/396 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 959 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 900 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | |||||||||||| |||||| || |||||| | || Sbjct 899 GAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCCCCGGG 840 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| || |||||| | |||||||| | || || ||||||| Sbjct 839 CTCAACCTGGGAACTGCATTCAAAACTGACGAGCTAGAGTATGGTAGAGGGTGGTGGAAT 780 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 779 TTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGGCGACCA 720 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 719 CCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 660 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||||||| ||||| || ||| | | || || ||| Sbjct 659 TGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTGGGAGCCTTGAGCTCT-TAGTGG 601 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| |||||| ||||| || ||||||||||| Sbjct 600 CGCAGCTAACGCATTAAGTTGACCGCCTGGGGAGTA 565 >seq160 Length=64135 Score = 352 bits (390), Expect = 7e-95 Identities = 318/397 (80%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 876 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTACTCG 935 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| |||||||||||||| ||||||| | ||||||| | || Sbjct 936 GAATTACTGGGCGTAAAGCGTGCGTAGGTGGTTGTTTAAGTCTGTTGTGAAAGCCCTGGG 995 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || | ||| | || |||| | |||||||| | || || |||||||| Sbjct 996 CTCAACCTGGGAATTGCAGTGGATACTGGGCGACTAGAGTGTGGTAGAGGGTAGTGGAAT 1055 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| ||||||| |||||||||||||| || ||||||||| | |||||||||| ||| Sbjct 1056 TCCCGGTGTAGCAGTGAAATGCGTAGAGATCGGGAGGAACATCCATGGCGAAGGCAGCTA 1115 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1116 CCTGGACCAACACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1175 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTC-CGGTG 371 |||||||||||||| ||||||||| ||| | ||| ||| ||| || | | || Sbjct 1176 TGGTAGTCCACGCCCTAAACGATGCGAACTGGATGT-TGGGTGCAATTTGGCACGCAGTA 1234 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| ||||| ||||| || ||||||||||| Sbjct 1235 TCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGGAGTA 1271 >seq242 Length=118535 Score = 342 bits (378), Expect = 1e-91 Identities = 314/396 (79%), Gaps = 2/396 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 117504 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 117445 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| |||| ||| ||| |||||| | | | Sbjct 117444 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTCGGAAAGAAAGATGTGAAATCCCAGAG 117385 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || ||||| ||| |||| | | ||||||||| || || | ||||||| Sbjct 117384 CTTAACTTTGGAACTGCATTTTTAACTACCGAGCTAGAGTGTGTCAGAGGGAGGTGGAAT 117325 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| || | Sbjct 117324 TCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAGCCT 117265 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | |||||| || | || |||||||||||||||||||||||||||||||||| Sbjct 117264 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 117205 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||| ||||||||| ||||| ||| ||| || | | || ||| Sbjct 117204 TGGTAGTCCACGCCCTAAACGATGTCAACTAGCTGTTGGG--GCCTTCGGGCCTTGGTAG 117147 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| |||| || ||||||||||| Sbjct 117146 CGCAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 117111 >seq553 Length=5624 Score = 298 bits (330), Expect = 1e-78 Identities = 304/394 (77%), Gaps = 12/394 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 811 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA 870 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||||||||||||| || || ||||||||| |||||||| | ||||||||| Sbjct 871 TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTCAGGGGTGAAAGACGGTGGCTCAAC 930 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | | ||| |||| |||| | ||| || | || || || | | ||||| Sbjct 931 CATCGCAGTGCCCTTGATACTGATGAGCTTGAATACACTAGAGGTAGGCGGAATGTGACA 990 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 ||||||||||||||| ||||||| ||||||| | |||||||| |||| || Sbjct 991 AGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATTGCGAAGGCAGCTTACTATG 1050 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 ||| | |||| ||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1051 GTGTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAG 1110 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC- 375 |||||||| ||||||||||||||| | ||| | | ||| | | || || || Sbjct 1111 TCCACGCCCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCT 1162 Query 376 -AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||||||||||||||||||||| Sbjct 1163 AAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTA 1196 >seq2325 Length=420 Score = 242 bits (268), Expect = 9e-62 Identities = 297/415 (72%), Gaps = 43/415 (10%) Strand=Plus/Plus Query 36 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGC 95 |||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | | Sbjct 1 GCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCTC 60 Query 96 GTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGA 155 ||||| ||||| | ||| | |||||| | ||||||||| | || |||| | | Sbjct 61 GTAGGCGGTTTGTCGCGTCTGCTGTGAAATCCGGAGGCTCAACCTCCGGCCTGCAGTGGG 120 Query 156 AACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCG 215 || | | ||||||||| | ||||| | |||||||||| ||||||||||| |||||| Sbjct 121 TACGGGCAGACTAGAGTGCGGTAGGGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCG 180 Query 216 TAGATATTAGGA----------------------------------------GGAACACC 235 |||||| |||| |||||||| Sbjct 181 CAGATATCAGGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACACC 240 Query 236 AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 |||||||||| | | |||| | ||||||||| |||||| |||||| |||||||||| Sbjct 241 GATGGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGGGTGGGGAGCA 300 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG 355 |||||| ||||||||||||||||||||| ||||||||| || ||||| ||| |||| Sbjct 301 AACAGGCTTAGATACCCTGGTAGTCCACCCCGTAAACGTTGGGAACTAGTTGT-GGGGTC 359 Query 356 CAT--AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | | | | ||| |||||| |||||| ||||| || ||||||||||| Sbjct 360 CATTCCACGGATTCCGTGACGCAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTA 414 >seq5829 Length=272 Score = 239 bits (264), Expect = 1e-60 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 46 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTT 105 |||||||||||| || |||||| |||||||||||||||||||||| || |||||| |||| Sbjct 272 TAATACGTAGGGTGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGAGTTCGTAGGCGGTT 213 Query 106 TCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGG 165 | | ||| |||||| | ||||||| | || ||| || || | | Sbjct 212 TGTCGCGTCGTTTGTGAAAACCAGCAGCTCAACTGCTGGCTTGCAGGCGATACGGGCAGA 153 Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 || |||| | | ||||| | |||||||||| |||||||||||||||||| |||||| || Sbjct 152 CTTGAGTACTGCAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAG 93 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 |||||||||| ||||||||||||| | |||| | ||||||||| |||||| ||||||| Sbjct 92 GAGGAACACCGGTGGCGAAGGCGGGTCTCTGGGCAGTAACTGACGCTGAGGAACGAAAGC 33 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 ||||| ||| |||||||||||||||||||||| Sbjct 32 GTGGGTAGCGAACAGGATTAGATACCCTGGTA 1 >seq2145 Length=12713 Score = 226 bits (250), Expect = 7e-57 Identities = 178/213 (84%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 36 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGC 95 ||||||||||||||||| |||||||||||||| | |||| ||||||||||||||| | | Sbjct 12501 GCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGATTTACTGGGCGTAAAGCGCAC 12560 Query 96 GTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGA 155 ||||| || | ||||||||| ||||||| | ||||||||||||| ||||| ||||| Sbjct 12561 GTAGGCGGACTATTAAGTCAGGGGTGAAATCCCGGGGCTCAACCCCGGAACTGCCTTTGA 12620 Query 156 AACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCG 215 |||| | || |||| | ||| || ||||||||||| ||||||| |||||||| || Sbjct 12621 TACTGGTAGTCTTGAGTTCGAGAGAGGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCG 12680 Query 216 TAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||||||| |||||||||||||||||||||||| Sbjct 12681 TAGATATTCGGAGGAACACCAGTGGCGAAGGCG 12713 >seq4 Length=49023 Score = 125 bits (138), Expect = 2e-26 Identities = 233/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||| Sbjct 23068 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCAAGCATTA 23127 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG-----TGAA 123 | || || |||||||||||||||| ||||| ||| ||| | | ||| || | Sbjct 23128 TTCGTAAGGACTGGGCGTAAAGGGTATGTAGGCAGTTCGATAAATTAAAGGCCTTATGTA 23187 Query 124 AGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGG 182 | | || || | || || | | ||| | ||||||| | || | Sbjct 23188 AAAAACAGACTGAAAAAGGCTGAAGGCATAAGCAACAATCGAACTAGAGTAGAAAAGATG 23247 Query 183 CAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG-TGGC 241 | | | || ||| || || | | |||| |||| | |||| || ||| |||| Sbjct 23248 AATTTAGTATATCTAATGGAGAGATAAAATTCGTATAAATTATATAGACTTTCAGTTGGC 23307 Query 242 GAAGGCGGCTTGC--TGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 | | || | | | ||| |||||| |||||| |||| || | ||||||||||| Sbjct 23308 GCAAGCAAAATTCAATAAACT---ACTGACGCTGAGGTACGAAGGCATAGGGAGCAAACA 23364 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||| |||||||||||| | || ||||||||||| Sbjct 23365 GGATTAGAGACCCTGGTAGTCTATGCAGTAAACGATGA 23402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203075745536