Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq242 284 2e-74 seq291 253 4e-65 seq160 194 3e-47 seq3209 145 1e-32 seq553 132 9e-29 seq994 123 5e-26 seq3207 113 8e-23 seq4 73.4 7e-11 >seq242 Length=118535 Score = 284 bits (314), Expect = 2e-74 Identities = 260/324 (80%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 115807 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 115748 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAAC---CC 117 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||| || Sbjct 115747 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACC 115688 Query 118 GGCCCTTTGGGTCATTGCATGCTGAATACATAGG-TATGCAAAGCGAACGCGGCGAACTG 176 | | || | || | |||||||||||||| || |||||||| || |||||| Sbjct 115687 GCAGCAATGCGGTATCCCTAGCTGAATACATAGGCTAGTGGAAGCGAACCGGGTGAACTG 115628 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 115627 AAACATCTCAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGTGGCGAGCG 115568 Query 237 AAATGGGATGAGCCTTTACGAGATAG-TTGAATTGATAGTGGAATCCTCTGGAAATAGGA 295 |||| ||| ||||||||||| ||| || | |||| | ||| |||||| Sbjct 115567 AAATCGGAAGAGCCTTTACGTTTTAGCATGCA-AGATAATCGAACGGAATGGAAAGTCCG 115509 Query 296 GCCATAGCGGGTGATAGCCCCGTA 319 ||| |||| ||||||||||| ||| Sbjct 115508 GCCGTAGCAGGTGATAGCCCTGTA 115485 >seq291 Length=3003 Score = 253 bits (280), Expect = 4e-65 Identities = 255/329 (78%), Gaps = 18/329 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| ||||| ||||| | Sbjct 621 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAA 680 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| ||||| || Sbjct 681 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGC 740 Query 121 CCT------TTGGGT-CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAA 173 | | ||| | | || || |||||||||||||| | ||||||| || ||| Sbjct 741 CATCATAAGATGGTTACCTTACA--CTGAATACATAGGTGTATGGAGCGAACCAGGGGAA 798 Query 174 CTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGA 233 |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 799 CTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGA 858 Query 234 GCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGTGGAATCCTCTGGAAA 290 ||||| |||| |||| ||| ||| | |||| ||| |||| ||||||||| Sbjct 859 GCGAACGGGGACTAGCCCTTA------AGTGGCTTTGAGATTAGCGGAACGCTCTGGAAA 912 Query 291 TAGGAGCCATAGCGGGTGATAGCCCCGTA 319 | ||||||| |||||||||||| ||| Sbjct 913 GTGCGGCCATAGTGGGTGATAGCCCTGTA 941 >seq160 Length=64135 Score = 194 bits (214), Expect = 3e-47 Identities = 200/257 (78%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 2476 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 2535 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 2536 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 2594 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | |||||||| || ||||||| Sbjct 2595 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 2652 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 || ||||||||| | |||||||||||||||||||||||||| ||||| | ||||||| Sbjct 2653 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCCTGAGTAGCGACGAGCGA 2712 Query 238 AATGGGATGAGCCTTTA 254 | |||| |||| ||| Sbjct 2713 ACGGGGACTAGCCCTTA 2729 >seq3209 Length=1033 Score = 145 bits (160), Expect = 1e-32 Identities = 184/253 (73%), Gaps = 14/253 (6%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| || ||||||||||||||| || |||||||||| |||| Sbjct 490 GGTGGATGCCTTGGCACCAGGAGCCGATGAAGGACGTAGGAGGCTGCGATAAGCCTCGGG 549 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| ||| | || ||||||| ||| ||||||||||||||||| || | | || Sbjct 550 GAGCTGTCAACCGAGCTGTGATCCGAGGATGTCCGAATGGGGAAACCCAGCAC---GAGT 606 Query 130 CATTGCATG----------CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAA 178 || | || ||||||| ||||| || || ||||| || ||| |||| Sbjct 607 GATGTCGTGTTACCCGCGCCTGAATATATAGGGCGTGTGGAGGGAACGTGGGGAAGTGAA 666 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||| |||| | |||||| ||||| |||||| |||||| |||||||||||||||| Sbjct 667 ACATCTCAGTACCCACAGGAAGAGAAAACAACCGTGATTCCGTGAGTAGTGGCGAGCGAA 726 Query 239 ATGGGATGAGCCT 251 | ||| ||| || Sbjct 727 AGCGGAAGAGGCT 739 >seq553 Length=5624 Score = 132 bits (146), Expect = 9e-29 Identities = 184/251 (73%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| | |||||||||||| | | |||||||||||||||| || ||||||| Sbjct 2404 AGAGCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATA 2463 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||| | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 2464 AGCTCCGGGGA-TTAGCAAATATGAATTAATCCGGAGATTTCCGAATGGGGAAACCTGGC 2522 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | | | | | | | |||| | ||| ||| ||| | |||||||||| Sbjct 2523 ----TAGTTGAAGACTAGTCG--TACA-AAGTACGCA-----AACCTGCTGAACTGAAAC 2570 Query 181 ATCTAAGT-AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||||||| ||| | ||||| ||||| || |||| || |||||||||||||||||| Sbjct 2571 ATCTAAGTAAGCAG-AGGAAGAGAAAATAATAATGATTTCCTAAGTAGTGGCGAGCGAAA 2629 Query 240 TGGGATGAGCC 250 || | ||||| Sbjct 2630 GGGAAAGAGCC 2640 >seq994 Length=2704 Score = 123 bits (136), Expect = 5e-26 Identities = 180/253 (71%), Gaps = 15/253 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | || ||| ||||||||||| | ||||||| Sbjct 1885 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTAGCAATCTGCGATA 1826 Query 61 AGCTGCGGGGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 ||| |||||| ||| || || ||||||||| | | ||||||||||||||||| | Sbjct 1825 AGCCTCGGGGAACTGAT-AAGCAAGTTTTGATCCGAGGGTGTCCGAATGGGGAAACCCCG 1767 Query 120 CCCTTTGG------------GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACG 166 | || || | | | ||||||| ||||| | | || ||||| Sbjct 1766 CTGGGCGGCGTGCCGACCTAGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACG 1707 Query 167 CGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 || ||| |||||||||| |||| | |||||| ||||| |||||| |||||| |||| Sbjct 1706 TGGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAGCAACCGCGATTCCGTTAGTA 1647 Query 227 GTGGCGAGCGAAA 239 ||||||||||||| Sbjct 1646 GTGGCGAGCGAAA 1634 >seq3207 Length=1578 Score = 113 bits (124), Expect = 8e-23 Identities = 96/117 (82%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||||||||||||| || ||||||| Sbjct 1138 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATA 1079 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| ||||||| | || || || |||||||||| ||||||||||||||||||||| Sbjct 1078 AGCGTCGGGGAG-GTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 1023 Score = 105 bits (116), Expect = 1e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 141 GAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAA 200 ||||||||||| | |||||||| ||| ||||||||||||||||||| | | |||||| Sbjct 810 GAATACATAGGGGTTAGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGGAAA 751 Query 201 AGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 || ||||| ||||| ||| ||||||||||||||||| Sbjct 750 GGACATCAAACGAGACTCCGTAAGTAGTGGCGAGCGAA 713 >seq4 Length=49023 Score = 73.4 bits (80), Expect = 7e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||| |||||||||| |||| || |||||||||||| ||| ||||| |||||||||| Sbjct 32774 GAAGTGAAACATCTCAGTAACTATAGGAAAAGAAATTAACAAAGATTTTGAAAGTAGTGG 32833 Query 231 CGAGCGAAAT 240 ||||||||| Sbjct 32834 TGAGCGAAAT 32843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918305156832