Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq160 358 2e-96 seq291 343 5e-92 seq553 333 9e-89 seq242 333 9e-89 seq1610 197 5e-48 seq4 80.6 9e-13 >seq160 Length=64135 Score = 358 bits (396), Expect = 2e-96 Identities = 417/554 (75%), Gaps = 14/554 (3%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||| |||||||||| | ||| ||| || ||| || | ||| || ||| |||||| Sbjct 4793 TCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTCCGACCGCGCTGAG 4734 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 | ||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 4733 CGTACCTTCGAGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 4675 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCACTACGGTCAGAG 191 ||| ||| |||||| | |||||| |||| || |||||||| || | ||| ||| | Sbjct 4674 CCATACACGGTCCCCGATCCAGATTATGGACCCAGGTTAGAACGTCAAGCACGA-CAGGG 4616 Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251 ||||||||||| | | |||||| | |||||| | | |||||| ||||||||||| Sbjct 4615 TGGTATTTCAAGGATGGCTCCACTGCAGCTAGCGCCACAGTTTCATAGCCTCCCACCTAT 4556 Query 252 CCTACACAAACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 |||||||| || | || || | || | |||||||||| ||||| | |||||||||| Sbjct 4555 CCTACACAGAC-GAACTCAACGTTCAGTGTAAAGCTATAGTAAAGGTTCACGGGGTCTTT 4497 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| || ||| ||||||| || | | ||||||||| | | || ||| Sbjct 4496 CCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT 4437 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4436 GGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 4377 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| ||||||||||| |||||||||||||||||||| || | || Sbjct 4376 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGC 4317 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 || | | || ||| || | ||||||||||||||||||||||||||| Sbjct 4316 TTCGC------CTTG--CGGCTGACCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTC 4265 Query 550 AGTCCGTATACCTC 563 | || ||||| || Sbjct 4264 ACACCCTATACGTC 4251 >seq291 Length=3003 Score = 343 bits (380), Expect = 5e-92 Identities = 422/568 (74%), Gaps = 20/568 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 2963 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 2905 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||||| | |||||||| Sbjct 2904 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCA 2846 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| |||||||| | | || ||| | || || |||||| || Sbjct 2845 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAA--CCT 2788 Query 180 CTACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | | ||| |||||||||||| | |||||| ||| |||| ||| ||| Sbjct 2787 CAAAGTTGCCAGGGTGGTATTTCAAGGTTGGCTCCACGCGAACTGGCGTCCACGCTTCAA 2728 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || |||||||||||||||||||| | | || ||| | | |||||||||| ||||| Sbjct 2727 AGCCTCCCACCTATCCTACACAAGCAAATTCAAAGTCCAGTGCAAAGCTATAGTAAAGGT 2668 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTC 355 | |||||||||| |||| |||||| || || ||||||| || | | ||||||| Sbjct 2667 TCACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTC 2609 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 || | | || ||| |||||||| | |||||||||||||||||||||||||||||| Sbjct 2608 ACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 2549 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 2548 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 2489 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | || || | || ||| || | |||||||||| || Sbjct 2488 CTTCGATCAAGAGCTTCGC----------GTTAGCTAACCCCATCAATTAACCTTCCGGC 2439 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 2438 ACCGGGCAGGCGTCACACCCTATACGTC 2411 >seq553 Length=5624 Score = 333 bits (368), Expect = 9e-89 Identities = 416/568 (73%), Gaps = 27/568 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||| ||||| | ||| ||||||||| ||| ||| || ||||| || | || || Sbjct 4751 TCGGCTTGTCTGCCTCACAGTCAAGCAAGCTTATGCTATTGCACTCCTCATACGGTTACC 4692 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||| ||||||| ||||||||||| |||| ||||| | ||| |||||| Sbjct 4691 AAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTACCTTTTTGGAGG-CGACCACCCCAG 4633 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||| || || ||||| | | || | |||||| | | | Sbjct 4632 TCAAACTACCCATCAAACAATGTCCTCCGACTAGCGGA---------GTTAGACACCGAA 4582 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 ||| | || ||||||||||||| |||||||| || |||||| ||||| ||||||| Sbjct 4581 TACAGAAAGGGTGGTATTTCAACGTTGACTCCACGACGCCTAGCGACGCCGCTTCATAGT 4522 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | | |||| |||| || | |||||||||| | Sbjct 4521 CTCCCACCTATCCTACACATCCTGTATCCAATGTCAATGTTAAATTGTAGTGAAGGTGCA 4462 Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||||| | ||| | | | || |||| || | || ||||||||||| Sbjct 4461 TGGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCG 4402 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 || ||| ||||||||| | || ||||||| ||||||||||||||||||||||||| Sbjct 4401 AGCTCATGGCTGAGACAGC-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACC 4343 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4342 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 4283 Query 479 CAATTACCCGCCTCACACACCACGTGGTGT---GCTCACGAGTCCTCTTAACCTTCCAGC 535 | ||| || || ||| | || || ||||||||||||||||| Sbjct 4282 CGATTCAATGCTTC-----------GGTTTAACCCTAACATCCCCTCTTAACCTTCCAGC 4234 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||| ||||| || ||||| || Sbjct 4233 ACCGGGCAGGTGTCAGGCCTTATACTTC 4206 >seq242 Length=118535 Score = 333 bits (368), Expect = 9e-89 Identities = 416/567 (73%), Gaps = 25/567 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACT--CACCACCTGATTG 58 ||||||||| |||||| ||||||||| | ||| ||| || |||| || ||| |||| Sbjct 113473 TCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAGCAC--GATTT 113530 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| | || | ||||| | | ||||||||||| ||||||||| | ||||||| Sbjct 113531 CCGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTACACTTTGGGAGGAGA-CCGCCCC 113589 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 ||| ||||| ||||||| ||||||||||| | || ||| | || ||||||||||| | Sbjct 113590 AGTCAAACTGCCCACCATGCACTGTCCCCGATCCGGATAACGGACCAAGGTTAGAACCGC 113649 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| |||||||||||| | | |||||| |||||| ||| ||| | Sbjct 113650 AAACAAACCAGGGTGGTATTTCAAGGATGGCTCCACGTGATCTAGCGACCACGCTTCAAA 113709 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | ||||||||||||||||||| ||| | | ||||| | |||||| ||| ||||| Sbjct 113710 GCCTCCCACCTATCCTACACAGGCCGGTTCACAGTCCAATGCAAAGCTACAGTAAAGGTT 113769 Query 299 CC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | ||||||||| |||| |||||| | | ||||| | || ||| ||| ||| | Sbjct 113770 CATGGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACACTTCAACTTCGC 113829 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || ||||||| || |||||||||||||||||||||||||||||||| Sbjct 113830 TGAGTCTCAGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 113889 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 113890 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCT 113949 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 || || | | || ||| ||| ||| ||||||||||| |||| Sbjct 113950 TCGATCAAGAG-CTTGCACCCCA----------TCA--------CTTAACCTTCCGGCAC 113990 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 113991 CGGGCAGGCGTCACACCCTATACGTCG 114017 >seq1610 Length=2511 Score = 197 bits (218), Expect = 5e-48 Identities = 212/279 (76%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 124 AACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTAC 183 |||||||||||| ||||||||| | || ||| | || || ||||||| ||||| Sbjct 1283 AACTACCCACCATACACTGTCCCGGATCCGGATAACGGACCGCGGTTAGACATCCATATA 1342 Query 184 GGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTC 243 ||| || |||||||||||| | |||||||| | || ||| |||| ||| ||||| Sbjct 1343 GGTAAGGGTGGTATTTCAAGGATGACTCCACGAAGGCTGGCGCCCCCGCTTCAAAGTCTA 1402 Query 244 CCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT-CCCGG 302 |||||||||||||||| ||| ||||||||| | |||||||||| ||||| | ||| Sbjct 1403 CCACCTATCCTACACATGCCGACACGAATGCCAGTGTAAAGCTATAGTAAAGGTGCACGG 1462 Query 303 GGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGC 362 ||||||| |||| |||| ||| | ||||||| || | | | ||||||||| | | Sbjct 1463 GGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGT 1522 Query 363 CTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGT 401 ||| | | |||||||| ||| |||||||||||||||||| Sbjct 1523 CTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGT 1561 >seq4 Length=49023 Score = 80.6 bits (88), Expect = 9e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| | | |||||||| |||||| ||| |||| || |||| |||||||||||| Sbjct 35776 GAGACAGTGGAGAGGTCGTTACACCATTCATGCGCGTCGAAAATTACTCGACAAGGAATT 35717 Query 431 TCGCTACCTTAGGA 444 |||||||||||||| Sbjct 35716 TCGCTACCTTAGGA 35703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702224193152