Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq553 307 2e-81 seq160 192 1e-46 seq552 174 3e-41 seq242 158 3e-36 seq4 100 6e-19 seq2145 87.8 4e-15 >seq553 Length=5624 Score = 307 bits (340), Expect = 2e-81 Identities = 256/313 (82%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | ||||||| || ||| |||||| Sbjct 833 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTCCTACACGT 774 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| | ||||||||| ||||||| ||||||| | || || | || |||| ||||| Sbjct 773 AGAAAGGTTTATTCCCGAATAAAAGCAGTTTACGACCCAGAGGGCTGTCTTCCTGCACGC 714 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||||||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||||| |||||| ||| Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||||||||||||||||||| |||| |||||| |||||| |||||| || Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 301 CCGATGAATCTTT 313 || || ||| ||| Sbjct 533 CCTATAAATATTT 521 >seq160 Length=64135 Score = 192 bits (212), Expect = 1e-46 Identities = 216/285 (76%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA-AGCTCCC----A 55 ||||||||||||| ||||||||| ||||||||| | ||||| || | | || | Sbjct 904 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTACCGTCAGAACAACCGAGTA 845 Query 56 CACGTGGAAGG-TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | || | |||| || || | ||||| ||||||| ||| || ||||| || Sbjct 844 TTAATCGACTGCTTTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTTCAC 786 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| ||||||| |||| || || |||||| |||||||||| |||||||||||| Sbjct 785 CCACGCGGTATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 726 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| || | |||||||||| | || Sbjct 725 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 666 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | || |||||||| |||||||||| |||| ||||| Sbjct 665 ACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAAT 621 >seq552 Length=1692 Score = 174 bits (192), Expect = 3e-41 Identities = 154/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| |||| Sbjct 1025 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCAT 1083 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1084 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 1143 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 || || | |||||||||| | || ||||| | || |||| ||| ||||||| || Sbjct 1144 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 1203 Query 269 TACTACCTAAT 279 |||| ||||| Sbjct 1204 AACTAGCTAAT 1214 >seq242 Length=118535 Score = 158 bits (174), Expect = 3e-36 Identities = 208/287 (72%), Gaps = 11/287 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCC------ 54 ||||||||||||| ||||||||| ||||||||| |||||| || || | Sbjct 117476 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTGCAGGTACCGTCAGTTTCACGGGGTA 117535 Query 55 --ACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | | || | ||| || ||| ||||| ||||||| ||| || |||||||| Sbjct 117536 TTAGCCCATGACG--TTTCTTTCCTGCCAAAAGTGCTTTACAACCCGAAGG-CCTTCATC 117592 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 ||||| ||||||| |||| | || |||||| |||| ||||| |||||||||| Sbjct 117593 GCACACGCGGGATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCC 117652 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| | | |||||||| | | Sbjct 117653 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAAACCAG 117712 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || |||| ||||||||||| || |||| ||||| Sbjct 117713 CTACGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACTAGCTAAT 117759 >seq4 Length=49023 Score = 100 bits (110), Expect = 6e-19 Identities = 144/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 79 ATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGAC 138 |||||||| ||||||| || | ||||||| ||||| | | ||||| ||| | Sbjct 23041 ATAAAAGAGGTTTACATTCTAT------TTCATCCCTCACGTGATATTGCTGGATCAAGC 22988 Query 139 TCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198 | || ||||| |||||||||| |||||||||| | | ||||| |||| | | || Sbjct 22987 TTGCGCTCATTGTCCAATATTCCCCACTGCTGCC--CATTTTGAGTT-GGACTATATTTC 22931 Query 199 AGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCG 258 | ||||||||||| || | ||||| |||| | ||| ||| | |||| | | |||| Sbjct 22930 AATTCCAATGTGGCTGATCATCCTCCCAGACCAACTACGAATCATCGGCTTGTTAGGCCT 22871 Query 259 TTACCCCGCCTACTACCTAAT 279 |||||| || |||||||||| Sbjct 22870 TTACCCTTCCAACTACCTAAT 22850 >seq2145 Length=12713 Score = 87.8 bits (96), Expect = 4e-15 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250 ||||||||||| ||| ||||| || | |||||||||| | |||| ||||| | || | Sbjct 12318 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTG 12259 Query 251 GTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATC 310 || |||| ||||||| || |||| ||||| ||||| | |||| | ||||| |||| Sbjct 12258 GTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCTCCGATAAATC 12199 Query 311 TTT 313 ||| Sbjct 12198 TTT 12196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068689625024