Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq153 443 9e-121 >seq153 Length=135117 Score = 443 bits (490), Expect = 9e-121 Identities = 569/781 (73%), Gaps = 9/781 (1%) Strand=Plus/Plus Query 3783 TGCCGCCCTCCTCGTACACCTCGGTATTCTCAGCGCCCACAGCGTACCCGTGGTAGAGCG 3842 ||||||| |||||||| ||||| || ||||| |||||| ||||| |||| ||||||| Sbjct 3574 TGCCGCCTTCCTCGTAGACCTCAGTGTTCTCCGCGCCCGGCGCGTAGCCGTCATAGAGCG 3633 Query 3843 GGTAGATTGCGGGGTCGTACTTCTCAGTCTTGCCCCCTACCCGCTCATACTTGCCCGGCG 3902 || | || || || |||||||| |||| || || ||| ||| || |||||||||| Sbjct 3634 GGAAAATGGCCGGATCGTACTTGAGGGTCTGACCGCCCACCTTCTCGTATTTGCCCGGCG 3693 Query 3903 AGGTGGTGTGGAAGAAGGTCACCCGGTAGCGGTTCTTCATGCCCACAGCGGTGAGCTTCT 3962 ||||||||||||| || || || || ||||| ||| ||||||| || |||||||||| Sbjct 3694 AGGTGGTGTGGAAAAACGTGACGCGATAGCGCGACTTGCTGCCCACCGCTGTGAGCTTCT 3753 Query 3963 GGAAAACGTTCTTGCGCTCGATGCGCGCACGCACCGCCTGATGAACGCGGTTGATCCACT 4022 |||| ||| ||||||||||| ||||| ||||| ||| | |||||||||||||| Sbjct 3754 GGAACGTGTTTTTGCGCTCGATACGCGCCTTGACCGCAGAATGCAGGCGGTTGATCCACT 3813 Query 4023 GGGTCATGATGACCGCATCGCCGCCGTTCTGACCAAGAAGCGCCCAGAAATTCTCCACCG 4082 ||||||||||||| | ||||| |||||||| || || |||||||| |||||||| |||| Sbjct 3814 GGGTCATGATGACGCCGTCGCCACCGTTCTGGCCGAGCAGCGCCCAAAAATTCTCAACCG 3873 Query 4083 CATCGGGCAATGGCTGCCGCTGTGCAACGTAGAACTCATGCACCTCATCAATGACGCACA 4142 | | ||| |||| |||| |||||||||||||| |||||||| |||||| | Sbjct 3874 CTGGTGCCAACGGCTTGCGCTCGTTGACGTAGAACTCATGGACCTCATCGATGACGACAA 3933 Query 4143 GCGAGTCTTTGAACTGATCTGGAATGCACCACTGGCCGGTCACATCATCCTTGTAGCAAG 4202 ||| || ||||||| ||| || |||||||||| || | || |||| | ||| | Sbjct 3934 GCGCATCCTTGAACTCATCAGGGATGCACCACTTTCCACT---GTCGTCCTGGCTGCAGG 3990 Query 4203 CGAACGTCGCTGCCACGTCCTTCGTGTCCACCAGTGTGAGCAACTGCTGCACGTCATCGA 4262 |||||| || | |||||||||||||| || |||| |||| ||||||| Sbjct 3991 AGAACGTGGCCACAACGTCCTTCGTGTCAACGCAAACCAGCAGCTGCCGCACGTCGCTCT 4050 Query 4263 CCTGCATGCCCAGGTATTCCGCGATTCGCTCATGGTTGAGGCCATTGAGGCGCGCGAAGA 4322 | |||||| |||| ||||| ||| ||| || || || | || || || | Sbjct 4051 CGGTCATGCCGAGGTGAGTGGCGATCTTCTCGTGGCGCAGCCCGTTCAACCGGGCAAACA 4110 Query 4323 CCCGACGCCCCTTCTTGATCGTCGGCAGGATGTGGTTCTTGACCGCGTCGTAGCTCTTGC 4382 | |||||||| ||||||| || ||||||||||| ||||| ||||||||||||||||| | Sbjct 4111 CGCGACGCCCTTTCTTGAGCGCGGGCAGGATGTGATTCTTTACCGCGTCGTAGCTCTTTC 4170 Query 4383 CAGCACGCGGAACACCCTCGTTAAAAACCAGCATGTCACCATTTCCCCATAGTCATGACC 4442 | || ||||| ||||| ||||| |||||||||| | |||| | || || || | ||| Sbjct 4171 CGGCGCGCGGCACACCTTCGTTGAAAACCAGCA--TTACCAGATACCTATGGTGAGGACG 4228 Query 4443 TTGCGCAGAATCCGGAACGCGACGGCAGAACCGATGAGCGCCAAGCACTCGCCAAGTTTG 4502 ||||| | ||| ||| |||| ||||| | | ||| | | ||||| | | Sbjct 4229 CGTCGCAGCAGATAGAAGACGATGGCAACGCCGATCATCACCATGGATGGCCCAAGCTGG 4288 Query 4503 A--ATGTCTGCACGAACCACCCCACGGTGCTGCCCGCATTTCCAAGCAGCGTGCCGATGC 4560 | | || ||| |||||| |||||||| || |||| | |||| | |||||||| Sbjct 4289 AACACATCGGCA--AACCACAACACGGTGCCACCGCCATTGGCGAGCATGGAGCCGATGC 4346 Query 4561 T 4561 | Sbjct 4347 T 4347 Score = 116 bits (128), Expect = 2e-22 Identities = 214/305 (70%), Gaps = 19/305 (6%) Strand=Plus/Plus Query 2055 TATACATTATGCGAAATCACGTATCCGCCGGATCTGGGCCTTTGTTGGGTCCGCGTGGCA 2114 ||||||||||||||||| | |||| | | |||| | || || || |||| |||| Sbjct 8740 TATACATTATGCGAAATGAGATATCGGTCC-ATCTCGCGGTTCGTGGGCTCCGGCTGGCG 8798 Query 2115 ATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGAT 2174 ||||| |||||| ||||||||||| | | ||| | | || |||||| ||||| Sbjct 8799 CTGGCTCAAGCTCTGGATCGGCTCTTGCTTCCCCTCTCGGACACCCAACAAGGACGAGAT 8858 Query 2175 CGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGGT 2234 || |||||| ||| | || ||||| |||| ||| || | |||||||||||||||||| Sbjct 8859 TGCAGCATGACCGAGATGGATACGCACGACCGCATCAACCTAACCGGCCCTTGGGCCGGT 8918 Query 2235 TTT-TCTTTC--CTCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTT---CCT 2288 ||| ||||| | ||| || || |||| || | ||| | ||| ||| ||| Sbjct 8919 TTTGGCTTTCAGCCCGG---TCACATGTTCACACCTG-AGGGCTAAAGC--CTTGAGCCT 8972 Query 2289 GAAGATCTGGCCTGGCTGTCACTCACCGCCTGCCA---AGCGCAGGAATGGCGCCGGATG 2345 | ||| || ||||| ||| |||| ||||| | || | ||||||||| | |||| Sbjct 8973 GTCGATATGACCTGGTGGTCGCTCA---CCTGCAATATCGCCCGGGAATGGCGGCTGATG 9029 Query 2346 ATGGA 2350 ||||| Sbjct 9030 ATGGA 9034 Score = 107 bits (118), Expect = 8e-20 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 2125 CTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGATCGCGGCATGA 2184 |||||| ||||||||||| | | ||| | | || | |||||| ||||| || |||||| Sbjct 1968 CTCTGGATCGGCTCTTGCTTCCCCTCTCGGACACCCGACAAGGACGAGATTGCAGCATGA 2027 Query 2185 TTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGGTTTTTCTTTCC 2244 ||| | ||| ||||| |||| ||| || | ||||||||||||||||||||| || | Sbjct 2028 CCGAGATGGACACGCACGACCGCATCAACCTAACCGGCCCTTGGGCCGGTTTTGGCTTTC 2087 Query 2245 TCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTT---CCTGAAGATCTGGCCT 2301 | | | || |||| || || ||| | ||| ||| |||| ||| |||||| Sbjct 2088 AGGCCGGCCACATGTTCACACCTGAGGGCTAC-AGC--CTTGAGCCTGTCGATATGGCCT 2144 Query 2302 GGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGA 2350 || ||| || ||| | | |||| ||||||||| | ||||||||| Sbjct 2145 GGTGGTCGCTGACCTGCAACATCGCGCGGGAATGGCGGCTGATGATGGA 2193 Score = 95.1 bits (104), Expect = 5e-16 Identities = 182/258 (71%), Gaps = 18/258 (7%) Strand=Plus/Plus Query 6041 GTAACCCTGCCCCGCCCTGCCCTTGCGATCAGCCGCCGAAGAATCCGGCCACCTTCTTTG 6100 ||| | | ||||||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct 5643 GTAGCACCGCCCCGCCCTGCCCT-GC-ATCAGCCG---AAGAAACCGGCCACTTTCTTCG 5697 Query 6101 CTGCCCACTTGCCGAAGCCGACCAGCGCGATCAGCGCGGCGGCACCTGCGAAGGCGGTCA 6160 ||||||||||| |||||| | || ||||| | | ||| || || | ||||| | Sbjct 5698 CTGCCCACTTGGTGAAGCCCAAGAGGGCGATGATGGTGGCCGCGCCGATCAGGGCGGGAA 5757 Query 6161 GTGCACCGGCCACCGACAGGCCGCTGAGGATGCTTTCGTAATCCATGGTGAAACTCCTTT 6220 ||| |||| | |||||| | | || || | |||||||||| ||||| Sbjct 5758 CGGCATCGGCAGCGCTCAGGCC-CGAAAGA--ATTGC---ATCCATGGTGTCTCTCCTAG 5811 Query 6221 CA-TGAGTGGTTG---GG--TTACCGGTT-TTTGTCGAAGAACGTCGCCACGGAACCGGC 6273 || || |||||| || || |||||| |||||| || | ||| || ||| |||||| Sbjct 5812 CATTGGTTGGTTGATTGGTTTTGCCGGTTATTTGTCAAACATCGTGGCGACGCTACCGGC 5871 Query 6274 AATCCGACCGGCGACGAA 6291 || || || ||||||| Sbjct 5872 CATGCGCCCCACGACGAA 5889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21984645554588