Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq250 235 1e-57 seq5011 178 3e-40 seq329 96.9 9e-16 >seq250 Length=59172 Score = 235 bits (260), Expect = 1e-57 Identities = 522/778 (67%), Gaps = 4/778 (1%) Strand=Plus/Minus Query 37667 GACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGC 37726 ||| ||||||| || | | || |||||| |||||| ||||| || ||| |||| Sbjct 46945 GACCTGCTGCAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGACCGCACCGGCACCGGC 46886 Query 37727 ACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTG 37786 |||| ||||||||| | ||| | ||||||||| | || || || ||||| || Sbjct 46885 ACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGACGGCTTCCCGCTGGTC 46826 Query 37787 ACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGC 37846 || || || || |||| | || || ||||| |||| ||||| ||||| | || ||| Sbjct 46825 ACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCTGTGGTTCCTGAAGGGC 46766 Query 37847 GATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGAC 37906 || || ||| || |||| | || || ||| || ||||| |||||||| || Sbjct 46765 GACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCATCTGGGACGAGTGGGCCGAT 46706 Query 37907 GAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGAC 37966 | |||||||| || || ||||| |||||| |||||||||| ||| || || Sbjct 46705 GCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCGCAGCTGGGCCACCGCCGAT 46646 Query 37967 GGGAAAACCATCGACCAGATCGCA-TGGGTTGTCGAAGAGATCAAACGAAATCCGCATTC 38025 || | |||||||||||| ||| ||| | || || |||||||| || || || |||| Sbjct 46645 GGCGGCAGCATCGACCAGAT-GCAGTGGCTGGTGGAGGAGATCAAGCGCAACCCCGATTC 46587 Query 38026 ACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCC 38085 || |||||| |||| ||||| ||||| || | || || ||||| | || ||| Sbjct 46586 GCGGCGGCTGGTGGTCAGCGCCTGGAACGTGGGCGAGCTGTCGCAGATGGCGTTGATGCC 46527 Query 38086 GTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCA 38145 || || || || |||||||| || | ||||| | | ||| || | | || Sbjct 46526 CTGCCACAACCTGTTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGTTGTACCA 46467 Query 38146 GCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGAC 38205 |||| || || | || | || ||||||| |||||||| |||||||| ||| | || Sbjct 46466 GCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGCTACGCACTGCTCAC 46407 Query 38206 GCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGA 38265 || ||||| || || || ||| || || || || | ||| ||||| Sbjct 46406 CCACATGGTGGCGCAGGCCACCGGGCTGGGCGTGGGCGACTTCGTGCATACCCTGGGCGA 46347 Query 38266 CGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCG 38325 || ||| ||||| || || | || || ||| ||||||| ||||| |||||| Sbjct 46346 CGCGCATCTGTACTCCAACCACGTTGACCAGGCGCGCGAGCAGCTGTCGCGCACGCCGCG 46287 Query 38326 CCCGCTGCCGAAGCTTGTGCTGAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACG 38384 | |||||||| |||| | |||| ||| | | ||| | | || | || | | || Sbjct 46286 CGCGCTGCCGCAGCTGTGGTTGAACCCGGCGGTCACCGAC-CTGTTCGGCTTCCAGTTCG 46228 Query 38385 ACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGT 38442 | ||| | |||| ||||||||| ||||| |||||||| || || ||||||||||| Sbjct 46227 ATGACATCCGCATCGACGGCTACGACCCGCACCCGGCGATCAAGGCGCCGGTGGCGGT 46170 >seq5011 Length=2423 Score = 178 bits (196), Expect = 3e-40 Identities = 356/528 (67%), Gaps = 0/528 (0%) Strand=Plus/Minus Query 37693 CGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCT 37752 ||||||||| | ||||| || || ||||| | || || |||||| |||| | Sbjct 969 CGGCGTCGACCGCGGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGAT 910 Query 37753 CCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTC 37812 || ||| | | | || ||||| | |||| || || ||| ||||| || || Sbjct 909 GCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATC 850 Query 37813 CATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGA 37872 |||||| | || ||||| ||||| | |||||||| |||||| || |||| | |||| Sbjct 849 CATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGA 790 Query 37873 GAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTA 37932 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| | || Sbjct 789 AAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTA 730 Query 37933 CGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATG 37992 ||| || |||||||| ||| | | ||||| ||||| ||||| || Sbjct 729 TGGCTATCAGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCAGATTGCGAA 670 Query 37993 GGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 | ||| | ||| || | |||||| |||| || || ||| | || ||| ||||| Sbjct 669 TCTCGTCAGTGCGATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAA 610 Query 38053 TGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGT 38112 | || | || || ||| ||||||||| || || | | || |||||||| || Sbjct 609 TCCGGCGCTCGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT 550 Query 38113 CGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTT 38172 ||| |||| | | || ||| | | |||||||||| |||| ||| | || | Sbjct 549 GGCCGACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGT 490 Query 38173 GCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCA 38220 |||||| || ||||| ||| || ||| |||| | ||||| || || Sbjct 489 GCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 442 >seq329 Length=161735 Score = 96.9 bits (106), Expect = 9e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 37739 TTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAA 37798 || |||| ||| | | |||||| | || || || ||||| || || || || |||||| Sbjct 13177 TTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAA 13236 Query 37799 TTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTC 37858 | ||| | ||||| || | |||||| | |||||||||| || || || || | Sbjct 13237 CTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATT 13296 Query 37859 CGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGAT 37918 |||| || | | || || | ||| |||||||||||||| || |||||||| || Sbjct 13297 GGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGAC 13356 Query 37919 CTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG 37954 || ||||| |||| || | |||||||| || ||| Sbjct 13357 CTGGGCCCTGTTTATGGATCACAATGGCGTTCATGG 13392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130623979208550