Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq44 293 2e-74 seq1288 196 4e-45 seq19 178 1e-39 >seq44 Length=77107 Score = 293 bits (324), Expect = 2e-74 Identities = 629/932 (67%), Gaps = 15/932 (2%) Strand=Plus/Minus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||||| || | ||| | ||| ||||||||||| || || | || || |||| ||| Sbjct 10073 CACAAACTTTGGCAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGT 10014 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 |||| ||||| |||||||| || || ||||| ||||| || | ||||| || || Sbjct 10013 GTACTGAACAATCTCGGTGCAAAGGTTGCTGCAAGAGATGGTTCCGAGGTTCTGCTGGTT 9954 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||||| ||||| || |||||||| | ||||| || || |||||||| | || || Sbjct 9953 GGACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGTGA 9894 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT----ACCGCCCTACCTT 66227 ||| ||||| ||| ||| ||| | | ||||| || || || | | || | Sbjct 9893 CTCGATGATAGCGAACCAGAGATCCTGAGCCTTTACGGTGCGACGAGAGAGGCCAGGTGT 9834 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 || | | || | |||||| | ||| || ||||| |||| || | | Sbjct 9833 CGCCT-CATACTTGGTGTAGAGCTCGCGGAACTCATCTCCCCAGCACTCGGCGAGGCCAG 9775 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAA 66345 | || | ||||| | || ||| ||| | || ||| ||||| ||| || Sbjct 9774 GTGCCTCATTGGGACAGAAGAGACTCCAGTCAGAGT--TGGTCTCGACACGCTCCATGAA 9717 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 ||||||| | |||||| ||||||||||| ||||| || || |||||| ||||||| Sbjct 9716 CAGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGGGCACGCATCTCCTCCTTGCCGTG 9657 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || ||||| | || ||||||||||||| |||||| |||||||| || ||||||| ||| Sbjct 9656 GTTCTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACGGC 9597 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | ||| | || || |||||||| |||||||||||||| || | |||||||| Sbjct 9596 AAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAAGAC 9537 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 || | ||| |||||||| ||||| || |||| ||||| ||| |||| ||| | | Sbjct 9536 GCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCGGCT 9477 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || || || | ||| | | ||| | ||||||||| | ||| |||||| || || Sbjct 9476 GGCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGCGCA 9417 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | | |||| | | || ||||| ||| ||| |||| || | |||| |||| Sbjct 9416 CTGCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTGGACGAGGAAGCA 9357 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || | |||||| |||| || | | ||||||||| || || ||||||||||| Sbjct 9356 AGAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGTAAA 9297 Query 66766 GTAATG--GCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGA 66823 | | | ||||| || | ||| || |||| | | || ||||||| ||||| || Sbjct 9296 GAGACGCTTCGAGAGCTG--GTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTGG 9239 Query 66824 ATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGAT 66882 || ||||| | ||| ||||| || | | ||| || || |||| | | || ||||| Sbjct 9238 ATACCGAGAGAGACA-CGCATGAGCATCTGTTGGGGACGCTCGATGATCTCGTCGTTGAT 9180 Query 66883 ATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 | | |||| ||| || || ||||||| Sbjct 9179 GCGGTGCAGGTAGCTGCGCTCGAGAGTCTTGA 9148 Score = 123 bits (136), Expect = 2e-23 Identities = 310/471 (66%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||||||||| |||| ||||| || || || || |||||||| || || Sbjct 10979 ATCGACAGTGAACTGGATGGCATCGGCAGCGGCACGAGTTCTGAGGTAGTACATTCCAGT 10920 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| || || |||||| ||||| ||||| || | || || ||| | || ||||| Sbjct 10919 CTTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGTCAACTTGGCAAAGTTTGGCTC 10860 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||| | || || |||||||| ||||| ||||| | |||||| || |||||||| Sbjct 10859 GGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAAAGGCACCACGGTCGGCAGCCAT 10800 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 ||| |||| |||| ||||||||||| |||||||| || || ||| Sbjct 10799 GTCGATGAGGGTACGTTGACGGATCTCCCAGACAGTCTTGTAGAGCTCCTTTAACTCGTC 10740 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||||| ||| |||| ||||| ||||| | || || || | || |||| Sbjct 10739 AGGAATGCCCTGGATGTTCTGGATGGAACCCTTGTGAGCGATGATCTGGTTCTTCATCTC 10680 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| | | | || || || | | | || || |||| ||| ||| Sbjct 10679 TGGTGTCCAGAGGTCAAGCTCCATGAGGTCCTTGAGCAGCTGCTTGTTGACGACAGTGAA 10620 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 ||| |||| || || ||||| ||||||||| ||| ||||| || | || | Sbjct 10619 CTCTCCGGCGAGGACGCGACGACTGTAGATGTTGCTGGTGTACGGTTCGAACGCCTCGTT 10560 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 ||| || || || || | || || || || |||||||| || |||| ||| Sbjct 10559 GTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCATGGGTGCAACCATCAA 10509 >seq1288 Length=22276 Score = 196 bits (216), Expect = 4e-45 Identities = 401/590 (68%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || || || |||||||| ||| |||| || || ||| |||||||||| ||||| || Sbjct 87 CGCTTTGTCTTGTTCCCTATCAAGTACCCCGACATCTGGAGCATGTACAAGAAGGCCGAG 146 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-- 61171 || || |||||||||| ||||||| |||| | | ||| | |||||||| Sbjct 147 GCGTCGTTCTGGACGGCGGAGGAGATCGACCTCGCGGGCGACCTCTCCGACTGGGACACC 206 Query 61172 --GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTC 61229 | | | ||| | || | || || || | | ||| | || |||||||| || || Sbjct 207 AAGCTCAACGA-CAACGAGCGCCACTTTATCACCAACGTGCTCGCCTTCTTTGCGGCGTC 265 Query 61230 GGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 |||||| |||||||| ||||| | || ||| | ||||||||| | | || Sbjct 266 GGACGGCATCGTCAACGAGAACCTCGCCACGCGCTTCATGTCCGAGGTGCAAATCCCCGA 325 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 |||||| || |||||||||||||| || ||||| || || ||||||| |||| |||||| Sbjct 326 GGCGCGCTGCTTCTACGGCTTCCAAATCGCCATCGAAAACATCCACTCCGAGACGTACAG 385 Query 61350 TGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | | || ||||| || ||||||| || | || ||| || | | | ||||| ||| Sbjct 386 TCTGCTGATCGACACCTACATCAAGGACACCGCGCGCAA--GGCCCAGCTCTTCAACGCC 443 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 ||||||||||| || || ||| ||| || || ||||| || ||||| | | Sbjct 444 ATCGAGACGATCCCCGCCGTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGGAT--CGAAA 501 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || || | |||| || || | | || ||||| | |||||||| | || ||| Sbjct 502 AC-TCGCGCAGCTTTGCCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTC 560 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||||| | | ||||| ||| | ||||| || || || |||| ||| || ||| Sbjct 561 TCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACC 620 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| || ||| |||| |||||||||||| | || || || ||||| Sbjct 621 TTCTCGAACGAGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 670 >seq19 Length=879724 Score = 178 bits (196), Expect = 1e-39 Identities = 431/647 (67%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || |||||||| || ||||||||||| ||||| || ||||||| || | || Sbjct 583496 GAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTAT 583555 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | || |||||||| || || | || | | ||| || | ||||| ||||| Sbjct 583556 GCGCTGCTGATCGATACCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC 583615 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 | |||||| | || || ||| ||||| || ||||| || ||||| | Sbjct 583616 GTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGG- 583674 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 ||| | |||| ||||| ||| |||| || || | || || || | || ||| Sbjct 583675 ----CGGAAAT-TTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTC 583729 Query 61528 AGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 || || | | | || | ||||| |||||||| ||| | || || ||||| || || || Sbjct 583730 AGCGGGAGCTTCTGTT-CGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAAC 583788 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 ||| || ||||||||||| || | || ||||| ||||||||||| ||||| |||| Sbjct 583789 CTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCT 583848 Query 61647 ATTCAAACGCTAT-CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | ||| || || ||| | | |||| || || ||| | || | Sbjct 583849 TTATAAA----ATGCTCAAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCG 583904 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | |||||| |||||| |||||||| | || || || ||||| || | || ||||| | Sbjct 583905 ACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGA 583964 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 ||||| ||| ||||| ||||||||||| |||||||| ||| | | || || Sbjct 583965 TGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAAC 584024 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 ||||| | || ||| || | | || || |||||||| ||||| ||||| || | Sbjct 584025 TGGGTTATACCAAAATATATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCC 584084 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || | ||||| || ||||| || ||||||||||| || || |||||| Sbjct 584085 TGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAA 584131 Score = 116 bits (128), Expect = 3e-21 Identities = 373/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 65993 ACAAA-CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||| ||||| || | ||| || || ||||| || ||||| | |||||| | || Sbjct 585670 ACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGCAACCTCGTCTTTGGAAGT 585612 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT---ATGGTGCCCAAATTCTGTTG 66108 |||||| | |||||| || || || || | | | | ||||| || ||||| || || Sbjct 585611 ATACTCTATAATTTCTGTACAAAGGTT---GGAACTTTTGATGGTTCCTAAATTTTGCTG 585555 Query 66109 ATTACTCTTGC-GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTT 66167 || |||| | |||| |||||| || |||| || || || || ||||| |||| | Sbjct 585554 GTTGGATTTGCTGTTTGC-TGCATCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCT 585496 Query 66168 GGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT---ACGTAC-CGCCCTA 66223 | || || | ||||| |||||| | |||| || | || ||| | || ||| Sbjct 585495 GTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTTACGGGCACGTCCTT 585436 Query 66224 CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283 | ||| |||||| | || || | ||||| | |||| | || | ||| Sbjct 585435 CTTTT----TCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGT 585380 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | || | || ||||| | | ||| || || | | |||||| | | ||| Sbjct 585379 CCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATG 585320 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || || ||| || ||| ||||| ||||| | ||| | || || | || || | || Sbjct 585319 AACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCA 585260 Query 66404 TGATTTTTGCGCAAGTCGAGGAA-CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 || ||||| |||| ||| || || |||| | || ||||||||||| |||||||| || Sbjct 585259 TGGTTTTTACGCAGGTCCAGAAAACTCAGC-ACATCTGCATGCCATGGCTCCAGGTAAAT 585201 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 ||| || | || ||||||| || ||||| ||||| || || || ||| || ||| || Sbjct 585200 GGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAA 585141 Query 66523 GACACGCAACATCGGTACGAGCCCGTT 66549 || |||||| ||||| | ||| || Sbjct 585140 TACTTTCAACATAGGTACAATCCCATT 585114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397517961967280