Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq1940 156 1e-33 >seq1940 Length=14353 Score = 156 bits (172), Expect = 1e-33 Identities = 242/338 (72%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 || ||| | |||||| | | || ||||| ||| ||||||||| |||| | ||||| | Sbjct 12928 GAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCAG 12869 Query 12235 GCCGGTGCTGCCG-TCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCA 12293 ||| ||||||| | || ||||||||| |||| || ||||| || | |||||| Sbjct 12868 AACGG-GCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTGC 12810 Query 12294 GGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGC-CAGGTGTGGCGTGAGG 12352 ||||| |||||||||||||| || ||||||||| | || ||| || ||||| ||| Sbjct 12809 CGCGAATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGT 12751 Query 12353 CCGCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGC 12412 ||||||| |||| || | ||| || |||| ||| ||||||| | | || | Sbjct 12750 TCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCG-CGCAGGGCCGT 12692 Query 12413 TCAAGTC-CCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAG 12471 ||| ||| ||| | || || ||||| | |||| |||| ||||| |||||| Sbjct 12691 CTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAG 12632 Query 12472 GTCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGC 12509 |||||||||||||||||| ||||| ||||| ||||| Sbjct 12631 GTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGC 12594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126179724288264