Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq19 302 1e-77 seq39 226 9e-55 seq916 159 1e-34 seq3591 114 4e-21 >seq19 Length=879724 Score = 302 bits (334), Expect = 1e-77 Identities = 823/1252 (66%), Gaps = 30/1252 (2%) Strand=Plus/Minus Query 1684 GATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT- 1742 ||||| | || || || | ||||| || |||||||| || || |||| ||||| || Sbjct 601576 GATGTTCATGCGCGGCAAATACTTGATTCCCGCGGTAATCCTACTATTGAGGTAGACGTA 601517 Query 1743 -TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTG 1801 ||||| |||| |||| | || || | || |||||||| || ||||| |||| Sbjct 601516 ATTACAGAGAATGGTGTGCTT--GGCCGTGCAGCAGTACCTTCAGGTGCTTCAACGGGTG 601459 Query 1802 AACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTC 1861 |||||||| ||||| ||| | || ||| ||| || || || ||| | Sbjct 601458 TTCACGAAGCCGTAGAGCTTAGGGACAATGATAAATCTGTATATATGGGCAAAGGTGTTT 601399 Query 1862 AAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTAC 1921 |||||| |||| ||||| ||| | ||||| || | | | ||| | || ||| Sbjct 601398 TAAAAGCTGTTGCCAACGTTAACGATAAGATTGCCGATGCCTTAAAAGGAGTGGATGTAT 601339 Query 1922 GTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTA 1981 ||| ||| | | || || | ||||||| || || || || ||| ||||| | Sbjct 601338 TTGAGCAAAATGCGATCGATGACCTAATGATCAAACTGGATGGCACAGAAAATAAAGGAA 601279 Query 1982 AACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT 2041 |||| |||||||| || ||| | ||||| ||| | || || || |||||||| | Sbjct 601278 AACTGGGTGCCAATGCCATTTTAGGTGTTTCTTTAGCCGTGGCTAAAGCAGCTGCACAGG 601219 Query 2042 A---CCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAA 2098 | || | | ||| | ||| | || |||| || | || | || || || | Sbjct 601218 AAAGCCGTCAG---CCATTATACCGTTATATTGGTGGTGTAAATGCCAATACCCTGCCCA 601162 Query 2099 CTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 ||||||||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 601161 TCCCAATGATGAACATCGTAAACGGCGGTTCTCACTCTGATGCCCCTATTGCTTTTCAGG 601102 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||||||||| | || | |||||| | | || ||||| | | ||||| | | Sbjct 601101 AATTTATGATCATGCCAGTTGGTGCGACTTCTTTTTCCGAAGCCTTAAGATGGGGAACAG 601042 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 || | || ||| || || || | | || | || ||| || || ||||||| Sbjct 601041 AAGTATTTCACAACCTGAAAGCCATTTTACATGACAGGGGCCTTTCTACGGCTGTAGGTG 600982 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 ||||||||||||| || || ||| || || |||||||||| || ||||| || | | Sbjct 600981 ACGAAGGTGGTTTTGCCCCAACTTTTGATGGTACTGAAGATGCAGTGGAAACCATTCTTA 600922 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 |||| |||||| || || || ||||||| | | | | | | ||||||| | Sbjct 600921 AAGCCATCGAAAAAGCAGGTTACAAACCAGGTGAGCAAATCTGCCTTGCTTTTGACTGCG 600862 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 || | |||||||| ||| | ||| | ||| ||||| || || ||||||||||| | Sbjct 600861 CAGCCTCTGAATTTTACAA---AGACGGCAAA---TACGATTATACAAAATTTGAAGGCG 600808 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACA 2518 | | ||| ||||| | ||| ||||| || ||||| | | || || Sbjct 600807 ATAAAGGTGCCGTTCGCAGCAGTGCTGAACAGGCAGAATACCTGGCTCAGCTGTCAGCCA 600748 Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| ||||||||| |||| |||||||| |||| |||| | ||||||| || ||||||| Sbjct 600747 AATATCCAATCATCTCTATTGAAGATGGAATGGCCGAAGATGACTGGGCTGGCTGGAAAT 600688 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC-- 2636 || || ||| | |||| |||||| |||| || || || || || ||||| Sbjct 600687 TGCTGACCGAAAAAATCGGTGACCGCGTTCAACTGGTAGGAGATGATTTGTTTGTAACCA 600628 Query 2637 ---TAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTAT 2693 ||| || | |||| || ||||||||| | ||| |||| ||||| || || | Sbjct 600627 ATGTAAAAC-GTTTAC----AACAAGGTATTGACAACCACACTGCAAACTCTATTCTGGT 600573 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||||| ||||| ||||| |||| || ||||| | | || | || | | | | Sbjct 600572 TAAAGTAAACCAGATCGGATCTTTAACAGAAACCATCAATGCCGT--AACTTTAGCACAA 600515 Query 2754 AGC--TGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 ||| ||| || || | || | ||| | ||||| || |||||| | || || Sbjct 600514 AGCAATGGTTATACCTCGGTCATGAGCCACAGAAGTGGTGAGACCGAAGATACCACGATT 600455 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 ||||| |||| || || ||| || || || || || ||||| || || || Sbjct 600454 GCTGACCTTGCCGTGGCCCTGAACTGCGGACAGATCAAAACCGGTTCTGCTTCCCGCTCT 600395 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 ||| | || || ||||||||||| |||||||| || ||||| |||| |||| Sbjct 600394 GACAGGATCGCAAAATACAACCAGTTGCTTCGCATTGAAGAAGAACTGGGTG 600343 >seq39 Length=206917 Score = 226 bits (250), Expect = 9e-55 Identities = 324/451 (72%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 2516 ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGA 2575 |||| ||||| |||||| | |||||||| || |||| |||||||||||||||||| |||| Sbjct 195298 ACAAGTACCCGATCATCTCGATCGAAGACGGCATGGCCGAAAACGACTGGGACGGCTGGA 195357 Query 2576 AATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAA 2635 | || || || | || || || || || |||| || |||||| | ||||| | Sbjct 195358 AGCTCCTGACCGACCAGCTCGGCAAGAAGGTGCAGCTGGTGGGCGACGACCTGTTCGTCA 195417 Query 2636 CTAACACTGCTTACCTTGAAA-AAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTAT 2693 | ||||| | |||| |||| || ||||| || || ||||| ||||| || Sbjct 195418 CCAACACCAAG-ATCTTGCGCGAAGGCATC-CAGAAGGGCGTCGCCAACTCGATCCTGAT 195475 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||| | ||||| ||||| || |||| ||||| || | ||| ||||||||||| || Sbjct 195476 CAAGATCAACCAGATCGGCACCCTGACCGAAACCTTCGCCGCCATCGAAATGGCCAAGCG 195535 Query 2754 AGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGC 2813 || || ||||| || || || || |||||||| || ||||| |||||||| || || || Sbjct 195536 CGCCGGCTACACCGCCGTCGTGTCGCACCGTTCGGGCGAAACCGAAGATTCGACCATTGC 195595 Query 2814 TGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGA 2873 || || || || || || ||||| || || ||||| || || |||| ||| | || Sbjct 195596 CGACATCGCCGTGGCCACCAACGCCATGCAGATCAAGACCGGCTCGCTGTCGCGTTCGGA 195655 Query 2874 CCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGA 2933 ||| || || || |||||||| |||| || |||||||| |||| | ||||||||| Sbjct 195656 CCGCATGGCCAAGTACAACCAGCTGCTGCGCATCGAAGAAGAACTGGCTGAAGTTGCCTC 195715 Query 2934 ATACCGTGGTTTGAAATCATTCTACAACTTG 2964 |||| || || || | ||||||||| || Sbjct 195716 GTACCCGGGCCTGGAAGCCTTCTACAACCTG 195746 >seq916 Length=47865 Score = 159 bits (176), Expect = 1e-34 Identities = 278/402 (69%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | |||||||| || ||||||| |||||||| || |||||| Sbjct 29787 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGCTGGCTGGAAAGTG 29846 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 | || || | || | || | || |||| || |||||| | ||||| || ||| Sbjct 29847 TTGACCGACAAGATCGGCGAGAAGATCCAGCTGGTGGGCGACGACCTGTTCGTGACCAAC 29906 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 || ||| || |||| || | | || | | | || ||||| ||| | ||||| | Sbjct 29907 ACCAAGATCCTGAAAGAAGGCATCG-ACAAAAAGATCGCCAACTCGATCTTGATCAAGTT 29965 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || |||| ||||| | || || ||| | ||||| || | || || Sbjct 29966 CAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 30025 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| || || ||||| ||||| || || || || || | Sbjct 30026 CTACACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACCT 30085 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || | ||| ||||| || || ||||| ||||| ||| ||| | || || | Sbjct 30086 GGCCGTGGGCACTTCGGCTGGGCAGATCAAGACCGGTTCCCTGTGCCGTTCCGATCGCGT 30145 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 | | || |||||||||||||| ||||||||||| ||||| || Sbjct 30146 TTCCAAGTACAACCAATTGCTGCGTATCGAAGAGCAACTGGG 30187 >seq3591 Length=3065 Score = 114 bits (126), Expect = 4e-21 Identities = 261/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||||||| |||||||| || ||| |||| | |||||||| || ||||||| Sbjct 2772 TACCCGATCATCAGCATCGAAGACGGCATGTCCGAAGATGACTGGGAAGGCTGGAAATAC 2713 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | || | || || | || || ||||| | ||||| || || Sbjct 2712 CTGACCGATCTGATCGGCGACAAGTGCCAGCTCGTCGGCGACGATCTGTTCGTCACCAAT 2653 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGT 2699 | ||| || | || || ||| || || || || || || |||| || Sbjct 2652 TCGGCTCGTCTGCGCGACGGCATCA-AGATGGGCGTGGCCAATTCCATTCTCGTCAAGGT 2594 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || ||| | |||||||||||||| |||| | |||| | ||||| Sbjct 2593 CAACCAGATCGGCACGTTGTCGGAAACTTTTGACGCGGTCGATACGGCGCACCGCGCTGG 2534 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 || || || || | || ||||| || |||||||| ||||| || || || || ||| | Sbjct 2533 CTATACGGCCGTCATGTCGCACCGCTCCGGTGAAACCGAAGACTCGACGATTGCCGATCT 2474 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || || || || || || || ||||| || || | || || | ||||| | Sbjct 2473 CGCCGTCGCCACCAATTGCGGACAGATCAAGACCGGCTCGCTTTCCCGCTCCGACCGGGT 2414 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGA 2909 || || |||||||| | | |||||||| Sbjct 2413 CGCCAAGTACAACCAGCTCATCCGTATCGA 2384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156019264523388