Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq836 114 5e-20 seq452 98.7 4e-15 seq441 93.3 2e-13 seq9 91.5 6e-13 seq3854 89.7 2e-12 seq1826 89.7 2e-12 seq374 86.0 3e-11 >seq836 Length=78687 Score = 114 bits (126), Expect = 5e-20 Identities = 162/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 222454 CGCACCCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCC 222513 || |||| ||| ||| | || ||||||||||| || ||| || ||||| | |||| | Sbjct 30402 CGAACCCTGTC-ATCTTGCATCGCGACCTCAAATCTCACAATCTTCTCGTCGACGACAAC 30344 Query 222514 CTGTCGATGAAGGTGGCCGACTTTGGGTTC-GCGCGGATCAAGGAAACCAACGCCACCAT 222572 | | | ||||||||||||||||| | || | ||| || | ||| ||||| || Sbjct 30343 TGGAAGGTCAAGGTGGCCGACTTTGGCCTGAGCACA-ATCGAGCAGACC---GCCACAAT 30288 Query 222573 GACACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACAC 222632 ||| ||||||||| || | |||||||||||||||| | | | | ||| |||||| Sbjct 30287 GACCGCGTGCGGCACACCCTGCTGGACGGCACCCGAGGTGCTGCGCAACCAGCACTACAC 30228 Query 222633 CGAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAG 222675 | || ||||||||||| || ||| | ||| ||||||||||| Sbjct 30227 GGTCAAAGCCGACGTCTATTCATTCAGTATCGTCATGTGGGAG 30185 >seq452 Length=76152 Score = 98.7 bits (108), Expect = 4e-15 Identities = 189/274 (69%), Gaps = 11/274 (4%) Strand=Plus/Plus Query 222469 ATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTG 222528 |||||||||||| ||||||| ||||||||| ||| ||| | || | ||| | Sbjct 12081 ATCCACCGCGACATCAAGTCGCTCAACCTGCTGCTGGACGAGAACATGAACGTAAAGATC 12140 Query 222529 GCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACC---ATGACACGGT---GC 222582 ||||||||| || |||| ||||| |||| | ||| |||||| || | Sbjct 12141 TGCGACTTTGGTCTCTCGCGTCTCAAG---TCCAAGTCGACCCAGATGACAAAGTCGATC 12197 Query 222583 GGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCC 222642 ||| |||| ||||| ||| |||||| | | | ||| ||||||||| |||| Sbjct 12198 GGCTCGCCCATCTGGATGGCGCCCGAGCTGTTGGCAGGCGAGAACTACACCGAAAAGGTG 12257 Query 222643 GACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTATGCG 222702 ||||||||| |||| || |||||| | |||||| | ||| ||| ||| ||||| | Sbjct 12258 GACGTCTACGCGTTTGGAATCATCCTCTGGGAGCTGGGCACCGGCGAGCTGCCCTACTCT 12317 Query 222703 GGCCTCGAC-ATCGGCCGCTGCGGCATGGCCGTC 222735 ||||||||| | || |||| || |||||||| Sbjct 12318 GGCCTCGACTCTGTGCAGCTGGCGC-TGGCCGTC 12350 >seq441 Length=99927 Score = 93.3 bits (102), Expect = 2e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 222600 GGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGG 222659 |||||||||| | || || | ||| ||||||||||||||||||||||||||||||||| Sbjct 60433 GGCACCCGAGGTGCTCGCCGAGGAGGGCTACACCGAGAAGGCCGACGTCTACTCGTTCGC 60492 Query 222660 CATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTATGCGGGC 222705 |||| || | |||||| | | ||| || || ||||| || ||| Sbjct 60493 CATCGTCCTCTGGGAGCTGCTGACGCGCCAGATCCCCTACGCCGGC 60538 >seq9 Length=436544 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 88977 AAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCT 89036 ||| ||| |||| | ||| || | || || |||| |||| | ||||||||||||| Sbjct 204299 AAGCTCAACGCCATCGGCATGGAATTCAAGGGCAAGAACGTGCTGCTGGTGGACGACTCC 204358 Query 89037 GTCGTGCGCGGCACCAC-ATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCAC 89095 |||||||||||||||| | || | || ||||| | ||| | ||||||| Sbjct 204359 ATCGTGCGCGGCACCACCAGCCGCGAA-ATCGTCGACATGGCGCGCGCCGCCGGCGCCAA 204417 Query 89096 CAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGA 89155 |||||| || |||| || | | || ||| | || | ||||||||| ||||||||||| Sbjct 204418 CAAGGTGTATTTCGCCTCGGCCGCGCCTCCGGTGCGCTTCCCCAACGTCTACGGCATCGA 204477 Query 89156 CATACCGTCGGCCAAGGAGCTCATTGCTTCTGGTCGCACCGA 89197 ||| || || | |||||||| || | || |||| ||| Sbjct 204478 CATGCCCACGCAGAGCGAGCTCATCGCCACCGGCCGCAGCGA 204519 >seq3854 Length=4223 Score = 89.7 bits (98), Expect = 2e-12 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 88977 AAGTTCACCGCCGTG--GGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACT 89034 ||| ||| |||| || | ||||| | ||||| |||| |||| || || | ||||||| Sbjct 524 AAGCTCAACGCCATGTCGACCGAGT-TCCAGGG-CAAGAACGTGCTCCTGATCGACGACT 467 Query 89035 CTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCA 89094 | ||||||| |||||||| |||||| || ||| | | ||| | | |||||| Sbjct 466 CGATCGTGCGGGGCACCACCTCCAAGGAGATCATCCAGATGGCGCGCGATGCCGGCGCCG 407 Query 89095 CCAAGGTCTACCTCGCTTCTTGCT-CTCCCCCGATCCGTTACCCCAACGTGTACGGCATC 89153 || ||| | |||||||| ||| | || || | || |||| |||||||||||||| Sbjct 406 CCTCGGTGACCTTCGCTTCT-GCTGCGCCTCCCGTGCGGCACCCGCACGTGTACGGCATC 348 Query 89154 GACATACCGTCGGCCAAGGAGCTCATTGC 89182 |||| |||||| | | |||||||| || Sbjct 347 AACATGCCGTCGCGCCACGAGCTCATCGC 319 >seq1826 Length=23101 Score = 89.7 bits (98), Expect = 2e-12 Identities = 356/550 (65%), Gaps = 19/550 (3%) Strand=Plus/Plus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 |||||||||| ||| || |||||||||| || || | || || || ||| ||| Sbjct 9202 GGCGCCGTAGCCGATGAGACAGTCGCGCTCCATCTCTCCGAGACGCAGACCTCCGCCTCG 9261 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCG-AGTACGGTCCCCTCTGCCGCGTG- 448756 | |||||||||||||| ||||| || | ||| || |||| | |||| | Sbjct 9262 GGCTCTTCCCTCGGTGGGCTGGCGCGTCAGCGTCACAGTGGGG---CCTCGGGCGCGCGC 9318 Query 448757 -TGCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACAT 448815 |||||||| ||| | ||| |||||||| ||||| |||||| ||| || |||| || Sbjct 9319 GTGCATCTTGTCCATGACCATGTGCTTGAGCTTCTGGTAGAAGATGGGTCCGAAGAAGAT 9378 Query 448816 GCGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCT 448874 | ||| ||| | |||||| || ||| ||| | | | ||| ||||| || | Sbjct 9379 GAAGCATTGCAGCGGCTCGCCGGTGACGCCCGACGTGACG-TAGTCCTTGCCGCCG---T 9434 Query 448875 CGATCATGCCCCTCTCCTCCATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAAAAGG 448934 | | | |||| | || | ||| |||||||| | | | ||| Sbjct 9435 AGCTGAAGCCCTTGGAGATCAGCACCTTGCTGATGTCGGCCACCTTGTCGCCGCCGAAGC 9494 Query 448935 CCGTGCCGTCCTGCGGCAAGCCGCTCTCACAG----CCCGTGATGGCCTGGAGGGCCTCG 448990 ||||||| || ||||||| | | ||| |||| || | ||| |||| Sbjct 9495 AGGTGCCGTA--GCCA-AAGCCGC-CGCGCAGGACGCCCGCCTTGCCGGCGAGCAGCTCG 9550 Query 448991 AGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGC 449050 | || | || || |||||| ||||| ||| | | ||||||||||| || |||||||| Sbjct 9551 ATCATCTTGCCGATGGTCATACGCGAGGGGAATCCGTGCGGGTTCATAATAATGTCGGGG 9610 Query 449051 GTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCC 449110 ||| || ||||||||||||||| || || | | |||| |||||| Sbjct 9611 CAGATGCCCAGGTCGGAGAAGGGCATGTCCTCCTGGCGCACGATGATGCCGCACACGCCC 9670 Query 449111 TTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGC 449170 ||||| |||||||| |||||||||| || ||||||| ||| || |||||| | Sbjct 9671 TTCTGTCCGTGGCGCGACGAGAACTTGTCGCCGAGCTCGGGACGGCGCGTCGAGCGCATC 9730 Query 449171 ACGATCTTGA 449180 | | ||||| Sbjct 9731 AGCAGCTTGA 9740 >seq374 Length=102525 Score = 86.0 bits (94), Expect = 3e-11 Identities = 139/196 (71%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 |||| ||||| | ||| || |||||| ||||| ||| | || | |||||| ||||| Sbjct 88573 GAGGATCTCGACAAGCATACCGATGGTCATACGCGAGGGGAACGCGTTCGGGTTGATGAT 88514 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCAC--C 449095 || ||| ||| | ||| | | || |||||||||||| |||||| |||| | Sbjct 88513 GAGGTCTGGCTTGAGGCCCGTCTCGGTGAAGGGCATGTTGATCTCGGG-----CCACAGC 88459 Query 449096 AGGCCGTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTT 449154 ||| | || |||||||| |||||||| | |||||||||| || || |||| || Sbjct 88458 TGGCTGAGCACTCCCTTCTGTCCGTGGCGAGAGGAGAACTTGTCTCCAATGACCGGG-TT 88400 Query 449155 GCGTGTGAAGCGCAGC 449170 || ||||||||||| Sbjct 88399 ACGGTTGAAGCGCAGC 88384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084456630539946