Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq8357 820 0.0 seq2420 277 5e-70 seq1940 206 7e-49 seq98 91.5 4e-14 >seq8357 Length=457 Score = 820 bits (908), Expect = 0.0 Identities = 456/457 (99%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 9192 CATCAACGAACAGCGCGCGTAGCCTGTCGCTCTGCTTGTCGGTGAGCAGGTCCGCGCCGG 9251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 CATCAACGAACAGCGCGCGTAGCCTGTCGCTCTGCTTGTCGGTGAGCAGGTCCGCGCCGG 398 Query 9252 TGTGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTCCCTGAACCCACGGTGCCCGTGGA 9311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 397 TGTGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTCCCTGAACCCACGGTGCCCGTGGA 338 Query 9312 TCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCCAGGCGCACGACGT 9371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 TCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCCAGGCGCACGACGT 278 Query 9372 GGAAGGGATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCGGCGGTCTTGAACC 9431 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 277 GGAAGGGATCCATCACCGTGACCGCGTCTGGGATCTCCTCTGCAGCGGCGGTCTTGAACC 218 Query 9432 CGGTGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGG 9491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 CGGTGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCGTCGCGGTCGG 158 Query 9492 CGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCAGCCTTGCTG 9551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 CGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCAGCCTTGCTG 98 Query 9552 GGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCAC 9611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 GGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCAC 38 Query 9612 GCCTGGTGTGGCGCCAGACGTGCTCATCGACGCCAAT 9648 ||||||||||||||||||||||||||||||||||||| Sbjct 37 GCCTGGTGTGGCGCCAGACGTGCTCATCGACGCCAAT 1 >seq2420 Length=14151 Score = 277 bits (306), Expect = 5e-70 Identities = 161/166 (97%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 10094 GCGAAGGCGGTCAGGTCAGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCG 10153 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 5388 GCGAAGGCGGTCAGGTCAGGGCGGCCAAAGCCGGCCGGCGGGGTAGCGTCGGTCACGTCG 5447 Query 10154 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTG 10213 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5448 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTG 5507 Query 10214 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10259 ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 5508 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 5553 Score = 170 bits (188), Expect = 5e-38 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 10280 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGA 10339 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5452 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTGCGGA 5511 Query 10340 CCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10381 ||||||||||||||||||||||||||||||||| ||||| || Sbjct 5512 CCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 5553 >seq1940 Length=14353 Score = 206 bits (228), Expect = 7e-49 Identities = 265/359 (74%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 36426 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATAC-C 36484 |||||||| |||||| | ||||| |||||||| ||||||||||| ||||| || || | Sbjct 12930 GCGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGC 12871 Query 36485 AATTCGGGCATTGCCG-TCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCG 36543 | ||||| ||||| | || ||||||||| ||||||| || || || | |||||||| Sbjct 12870 AGAACGGGC--TGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCG 12813 Query 36544 GCAAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGC-TCGGTGTGGCGTC 36602 || || || |||||||||||||| || |||||||| || ||| || || ||||| Sbjct 12812 TGCCGCGAATGAGTGGAAGGACGGCGATGCGCTGTTCCT-CCGTGCATCCGTCTGGCGCG 12754 Query 36603 AGCCGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGAC 36662 || |||||| ||||||| | ||| || | ||||||||||| || |||| ||||| | Sbjct 12753 AGTTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCC 12694 Query 36663 GTCTCCGGGCGCGCAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCG 36722 |||| || |||| |||| | |||||||| || |||| ||||| | ||||| | | | Sbjct 12693 GTCTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGG 12634 Query 36723 AAGTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGCTACCGTCACCCGCGCCGCC 36781 | ||||| || | ||||| || | || || ||||| |||||||| || ||| Sbjct 12633 AGGTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGCGCAGGTCACCCGTGCGGCC 12575 >seq98 Length=166217 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 7/152 (5%) Strand=Plus/Plus Query 31093 TTCACCGACTGGCGCCAGCTCGCCGCA-ACGACCGACGCAGTGCAGGCAGGCGGCTGGGT 31151 |||||||||||||| ||||| ||||| || || ||||| ||||| | ||||| Sbjct 138493 TTCACCGACTGGCGACAGCT-GCCGCTCACCACTGACGCGCTGCAGTGCGCCGGCTTCAC 138551 Query 31152 GTGGCGCGGTGT-GCTCCCGTGGATCAAGCCCAATGC---GCGCCCGCAGCTCGGGCGCT 31207 ||||||||||| ||| |||| |||| || | | |||||| ||||| ||||||| Sbjct 138552 CTGGCGCGGTGTTGCTGT-GTGGGACAAGACCGAGGGCGTGCGCCCCCAGCTGGGGCGCT 138610 Query 31208 TCACCAACCAGGCCGAGTTCGTCGTGTGGGGA 31239 || |||||||||||||| || ||||||||| Sbjct 138611 TCCGCAACCAGGCCGAGTATGTGGTGTGGGGA 138642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126710859145548