Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq250 172 8e-38 seq5011 140 5e-28 seq1432 131 3e-25 seq329 104 4e-17 seq878 95.1 2e-14 seq5202 89.7 8e-13 seq155 84.2 3e-11 >seq250 Length=59172 Score = 172 bits (190), Expect = 8e-38 Identities = 207/275 (75%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 196091 CAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA-CGTC 196149 ||||| ||||| | |||| ||| || | ||||| |||||||| ||||| | | Sbjct 46936 CAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGACCGCACCGGCACCGGCACGCGCAGC 46877 Query 196150 CTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAA 196209 | | ||||| |||||||||||| | ||| ||||| ||||||||||||||||| || Sbjct 46876 GTGT-TCGGCTGGCAGATGCGCTTCAACCTGGGCGACGGCTTCCCGCTGGTCACCACCAA 46818 Query 196210 GAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAA 196269 ||| || || ||||| || ||||| ||||| |||||||||||||| || || |||||||| Sbjct 46817 GAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAA 46758 Query 196270 CATCAAGTACCTGAATGACAAC--GGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTC 196327 |||| ||||| | |||||| |||| | | |||||| |||||||||| | | | Sbjct 46757 CATCGGCTACCTCACCGACAACCAGGTG-CGC-ATCTGGGACGAGTGGGCCGATGCCAAC 46700 Query 196328 GGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || ||||||| ||| | ||||| ||||| ||||| Sbjct 46699 GGCGACCTGGGTCCGATCTACGGCAAGCAATGGCG 46665 >seq5011 Length=2423 Score = 140 bits (154), Expect = 5e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 196086 TCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA 196145 |||| ||||| |||||| || |||| |||| | ||||||||||| |||||||| | Sbjct 990 TCTT-CAGCATGTGCTCGATACCGGCGTCGACCGCGGCGACCGTACCGGGACAGGCAC-A 933 Query 196146 CGT-CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACC 196204 ||| || | ||||| |||||||| ||||||||| | || || || | || Sbjct 932 CGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACG 873 Query 196205 ACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGAC 196264 || |||||||| ||||| |||||||| || || |||||||||||||| || || || Sbjct 872 ACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAA 813 Query 196265 ACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAA 196324 || |||||| || || || || ||||| || | |||||| | || ||||| |||| Sbjct 812 ACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAG 753 Query 196325 CTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || |||||||| || || | |||||||| Sbjct 752 AACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 715 >seq1432 Length=12607 Score = 131 bits (144), Expect = 3e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 196781 TCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCG 196840 || ||||||||||||||||| || || || |||||||||||||| |||||||||||||| Sbjct 8831 TCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCC 8890 Query 196841 TCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTC 196900 || ||||| ||||||| ||| | || || ||||| | | | || || || ||| Sbjct 8891 TCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGACTTC 8950 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGT 196950 || ||||| ||||| ||| |||| ||||| ||||||| | || ||||| Sbjct 8951 GTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGT 9000 >seq329 Length=161735 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||| | ||| | || || || || || || ||||||||||| || ||||| ||| | Sbjct 13186 CAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTA 13245 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 ||||| || || |||||| | ||||| | | ||||||||||| || |||||| Sbjct 13246 AAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTG 13305 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || | ||| ||| |||||| | |||||||| | ||| |||| ||||||| || Sbjct 13306 AAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCT 13365 Query 196343 GTTTACGGTAAGCAGTGGCGTGAATGG 196369 ||||| || || |||||| |||| Sbjct 13366 GTTTATGGATCACAATGGCGTTCATGG 13392 >seq878 Length=51136 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || || | |||| ||||| || Sbjct 39533 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 39474 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || ||||||||||||||| ||||| || || || || |||| Sbjct 39473 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 39414 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| ||||||| ||||| ||||| |||||||| Sbjct 39413 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 39357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 196808 GATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTACGCATTGCTGATTCACATGGTG 196867 ||| | |||||||| | |||| ||||| ||| | || ||||| | || ||| || Sbjct 39107 GATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACCCATATGCTG 39048 Query 196868 GCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATC 196927 || || ||| || || | || |||| || | || || ||| |||| | Sbjct 39047 GCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGACACCCACGCC 38988 Query 196928 TACTCCAATCACATGGAACAGGTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCG 196987 ||| ||| |||||||||||| | | |||||| | || | ||||| | ||||| Sbjct 38987 TACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAGAAGCTGCCG 38928 Query 196988 ACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGAA 197047 ||||| ||||| |||||||| | |||| |||||||||||||||||| || ||| Sbjct 38927 GAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAAGATTTTGAA 38868 Query 197048 CTGGTAGGCTACGA 197061 | || ||||| || Sbjct 38867 ATCGTGGGCTATGA 38854 >seq5202 Length=749 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 181 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 240 Query 4266 CAGGGTCGCCACATTTT 4282 ||| | |||| ||||| Sbjct 241 CAGAGGAGCCAAATTTT 257 >seq155 Length=27654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 407 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 348 Query 3857 C 3857 | Sbjct 347 C 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771442803520440