Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq406 174 5e-39 seq2553 127 6e-25 seq841 102 2e-17 seq401 100 8e-17 seq1084 96.9 1e-15 seq461 93.3 1e-14 >seq406 Length=38937 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 7096 GATGCACAGCAAAGGGTTGATGCTGCGCGCAATGACGCTGTCAATGCTGCTGCTAAGTCT 7155 || || ||||| ||| | || ||||||||||| ||| | ||||||| ||| || Sbjct 518 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 459 Query 7156 GGCAGGTTGCAGCAACAGCTCGCAAATATCCGCAAGCAGCTC-GTCGGATATTCCACCAC 7214 ||| |||||||||||||||||| ||||| |||||||| | | | ||| | |||| Sbjct 458 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 400 Query 7215 TGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 7274 | || ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 399 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 340 Query 7275 ATCTGTCGAAAGAAATCGACAGCTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGATT 7334 |||| |||| |||| ||||| |||||||| ||||||||| |||| ||||| ||| Sbjct 339 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 280 Query 7335 AGCGTGTGAGGCGCAGTACAATTCGCTG 7362 || ||||| ||||||| |||||||| Sbjct 279 AGTCTGTGAAAAGCAGTACGATTCGCTG 252 >seq2553 Length=3545 Score = 127 bits (140), Expect = 6e-25 Identities = 202/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 33622 ATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGA 33681 |||||||| ||||| |||||| || | ||||| |||||||| | || |||| | Sbjct 2570 ATTTCTGTCGTGTACCGTTCAACGCCTTCTTTATCTGTCCATTTGCGTGTTTGCAAACGG 2511 Query 33682 CCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTG 33741 ||||| | |||||| ||| ||||| | | ||||| |||||| ||||| || | |||| Sbjct 2510 CCTTCGATATAAACCGATGAACCTTTTTTCAAATACTGACCAGCTATTTCTGCCAACTTG 2451 Query 33742 CCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCA 33801 | | ||| | ||| ||||||||||| ||||| |||| || | || || Sbjct 2450 CGATAGAACGTGATGCGATGCCATTCAGTGATTTCCTTCCTCTCGCCGCTGTTTTTGTCT 2391 Query 33802 TTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTAT 33861 ||||| ||||| | || ||||| | |||||| || || ||||||| |||||||| Sbjct 2390 TTCCACGATTCGGTAGTCGCAACGCTGATGTTGGCCACTGCTTCGCCATTCGGCATGTAG 2331 Query 33862 CGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTAC 33911 || ||| || || || || | |||||| ||| ||||| || || || Sbjct 2330 CGAGTTTCAGGATCTTGTCCGAGGTTGCCGACGATAATTACCTTGTTGAC 2281 >seq841 Length=45872 Score = 102 bits (112), Expect = 2e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 33670 GTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATT 33729 ||||| | ||||||||| | || || || | ||| || | ||||| || ||||| | | Sbjct 39644 GTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACT 39703 Query 33730 TCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCA 33789 || ||||||||||| || | || ||||| |||||||| || |||||| |||| || Sbjct 39704 TCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCT 39763 Query 33790 GTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCA 33849 || || ||| ||| | |||||| || || || | ||| || || ||||| || Sbjct 39764 GTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTGCGCCCCCG 39823 Query 33850 TTTGGCATGTATCGCACTTCTGGGTC 33875 || || ||||| || ||||| || || Sbjct 39824 TTGGGGATGTAACGGACTTCCGGATC 39849 >seq401 Length=77198 Score = 100 bits (110), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 33703 CCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGC 33762 ||||| | ||||||||||| || ||||| |||| |||||| |||| |||||||||||| Sbjct 66430 CCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGC 66489 Query 33763 CATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGAT-GTAGC 33821 || || || |||||| | || || || |||||| ||||| | || || | || || Sbjct 66490 CACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCA-GCTTTCGCTGGTGGC 66548 Query 33822 AACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCC 33881 | | || ||| | || ||| ||| || || |||| || ||||| ||||| ||| Sbjct 66549 CAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCC 66608 Query 33882 TAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCAT 33926 |||||| || || ||||| || ||||| || |||||| Sbjct 66609 GGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCG---TGCCAT 66650 >seq1084 Length=8902 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 33678 CTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAG 33737 || |||||| | || || || || ||||||| |||||||||||||| |||||||||| Sbjct 8484 CTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGAC 8425 Query 33738 CTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTT 33797 || ||||| | | || ||||||||||| || | || ||||| || || ||| Sbjct 8424 TTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTT 8365 Query 33798 ATCATTCCATGATTCCGATGTAGCAA--CAGATACGTTGGCAACAGCGCCGCCATTTGGC 33855 ||| |||| || ||| |||| | || | |||| || || || || || Sbjct 8364 GTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGA--TTGGTTACTGCATTACCGTTCGGT 8307 Query 33856 ATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCG 33915 | ||| || |||||| || || || | ||||| | | ||| ||||||||||||||| Sbjct 8306 AAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGATCACTTTATTTACGCCG 8247 Query 33916 CGAG 33919 |||| Sbjct 8246 CGAG 8243 >seq461 Length=6970 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33691 TAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATA 33750 || || || | ||| || | ||||| |||||||| | ||| ||||||||||| || | Sbjct 2303 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 2244 Query 33751 ACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGAT 33810 || |||||||||||||| || |||||| |||| || || || ||| ||| | Sbjct 2243 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 2184 Query 33811 TCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCT 33870 || ||||| || || | ||| || || ||||| || || || ||||| || ||||| Sbjct 2183 TCTGATGTGGCCACCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCC 2124 Query 33871 GGGTCCTGGCC 33881 || || | ||| Sbjct 2123 GGATCATTGCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144955021532496