Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq67 149 9e-31 seq788 138 2e-27 seq553 104 3e-17 seq2001 89.7 7e-13 seq1469 89.7 7e-13 >seq67 Length=64939 Score = 149 bits (164), Expect = 9e-31 Identities = 363/542 (67%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 162304 GTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGAT 162363 || ||||| || || || || ||||| | || ||||| ||||| || || || || Sbjct 21267 GTGCAACCCGACGAGATCTACAACCTGGCCGCGCAGAGCCACGTAGGCGTGTCGTTCGAA 21326 Query 162364 CAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTC 162423 | || || ||||| || | |||||| ||||||| || | |||| || || || Sbjct 21327 GAACCGGAGTACACCGCCAACGCCGACGGCCTGGGCACGCTGCGCCTGCTGGAGGCGATC 21386 Query 162424 CGTCTTCTTGGTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTAT 162483 || | || ||||| | | | ||||||| ||| || |||||||| Sbjct 21387 CGCATCCTGAAGCTGGAAGACAAGGCCCGCTTCTACCAGGCGTCGACGTCGGAGCTTTAC 21446 Query 162484 GGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTAT 162543 || || || ||||| || || ||||| |||||||| || | ||||| || ||| || Sbjct 21447 GGCCTGGTGCAGGAAACGCCGCAGAAGGAAACCACCCCCTTCTATCCGCGCAGCCCCTAC 21506 Query 162544 GGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATA 162603 | | || || || || | | |||||||| | |||||| | ||| ||| | ||| Sbjct 21507 GCCGCGGCCAAGCTGTACGCCTACTGGATCAGCGTGAACTACCGCGAAGCCTACGGCATG 21566 Query 162604 CATGCCTCTAGCGGTATTCTATTCAATCACGAAA-GCTCACGCAGAGGAGAGACGTTCGT 162662 |||||| | ||| ||||| ||||| |||||| || || || | || || || ||||| Sbjct 21567 TATGCCTGCAACGGCATTCTGTTCAACCACGAATCGCCCAAGC-GCGGCGAAACCTTCGT 21625 Query 162663 CACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTG-TGGGACTCCAA-AGTGATCTA 162720 || ||||||||| ||| | | || | || || ||| |||| || || | || || Sbjct 21626 GACCCGCAAGATCACCCGCGGCCTGGCGCGCATC-GTGCTGGGCCTGCAGGAATGC-CTG 21683 Query 162721 CAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCT 162780 | || || ||||| || | || |||||||| || ||| |||||||| ||| Sbjct 21684 TACCTGGGCAACCTGTCGGCGCTGCGCGACTGGGGCCATGCCCGCGACTACGTCGAGATG 21743 Query 162781 ATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAG 162840 |||| ||||||| ||||| || | ||| || || ||||||||||| || || |||| Sbjct 21744 CAGTGGCTGATGCTGCAGCAGGACACGCCGGAAGACTATGTGATCGCCACCGGCATGCAG 21803 Query 162841 TA 162842 || Sbjct 21804 TA 21805 >seq788 Length=37928 Score = 138 bits (152), Expect = 2e-27 Identities = 252/369 (68%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 162469 ACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTAT 162528 || || ||||| ||||| ||| |||| ||||||| || ||||| ||| | || Sbjct 36956 ACTAGCGAGCTCTATGGAAAGGTTAGAGAGATCCCCCAGAGCGAGACCACCCCATTCTAC 36897 Query 162529 CCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGG 162588 ||| |||||||||||| || || || | | || ||||||||| | |||||| | Sbjct 36896 CCAAGATCCCCTTATGCGGTCGCCAAGCAGTTTGCTTTCTGGATCTGCGTAAACTATCGC 36837 Query 162589 GAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGA 162648 || ||| |||| |||| | | ||||||||| ||||| ||||| | || ||| Sbjct 36836 GAGGCCTACAACATGTATGCGTGCAACGGTATTCTGTTCAACCACGAGTCGCCCCGAAGA 36777 Query 162649 GGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTC 162708 || | || || ||||| ||||||||| ||| | || | || | | | || | | Sbjct 36776 GGCGCCACCTTTGTCACGCGCAAGATCACCCGCTTCGTGGCGCGCGTCAAGCTCGGCCAC 36717 Query 162709 CAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGAC 162768 | | | || ||| |||||| |||| ||| || |||||||| |||||| ||| Sbjct 36716 AAGGGCGTCCTCGCACTCGGAAACATCAACGCCAAGCGCGACTGGGGCCACGCCCGCGAC 36657 Query 162769 TACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCA 162828 ||||| ||||| |||||| ||||||| ||||| ||| || || || | ||| || || Sbjct 36656 TACGTCGAGGCGATGTGGCTGATGCTCCAGCAGGAGCGTCCCGACGACTTTGTCATTGCC 36597 Query 162829 ACTGGTGAG 162837 || || ||| Sbjct 36596 ACCGGCGAG 36588 >seq553 Length=5624 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 142852 TCCGTTATTCTCCACCA 142868 ||||||||||||||||| Sbjct 2162 TCCGTTATTCTCCACCA 2178 >seq2001 Length=201 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 |||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 154 TAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGATCCCGTTCA 95 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 94 CCTCCACCA 86 >seq1469 Length=277 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 |||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 175 TAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGATCCCGTTCA 234 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 235 CCTCCACCA 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691369941260520