Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq716 161 5e-35 seq98 127 1e-24 seq846 87.8 9e-13 >seq716 Length=76659 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 7100 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 7159 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 24602 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 24661 Query 7160 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 7217 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 24662 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 24719 Query 7218 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 7277 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 24720 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 24779 Query 7278 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 7337 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 24780 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 24838 Query 7338 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 7396 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 24839 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 24898 Query 7397 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 7456 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 24899 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 24958 Query 7457 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 7500 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 24959 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 25002 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 46689 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 46748 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 24602 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 24661 Query 46749 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 46806 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 24662 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 24719 Query 46807 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 46866 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 24720 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 24779 Query 46867 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 46926 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 24780 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 24838 Query 46927 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 46985 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 24839 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 24898 Query 46986 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 47045 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 24899 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 24958 Query 47046 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 24959 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 25002 >seq98 Length=166217 Score = 127 bits (140), Expect = 1e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 48249 GACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCCGGTCAGATGATG 48308 ||||| | ||| ||||| ||||| || || |||| || |||||| | || |||| ||| Sbjct 120497 GACGCGGCGAAGATGGGCGTGGCCTTCGACACCAGCGCTGAAGAGGCGGGCCAGACCATG 120438 Query 48309 GCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTCCTGGCCGATAAA 48368 || ||||| || || ||||| || ||||| |||||||| || |||||||| || Sbjct 120437 GCCACCTGGCGCACCGCCTTCAAGATGGGCCAGGACGACGTGGTCGTGCTGGCCGACAAG 120378 Query 48369 ATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCTGATATCGTGACG 48428 |||||||| ||||| || ||||| || || | | ||||||| || | |||| Sbjct 120377 ATCAACTACCTGGGCAACACCGGTCCCGCCAGCGTCCAGAAGATCAGCGAGGTGGTGAAC 120318 Query 48429 CGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATTGCCGCGATGGGC 48488 || || || |||| || | || || || ||| ||| | |||||| ||||| Sbjct 120317 CGCATCGGCGCGCTCGGTGAGGTGGCTGGCCTGGGCAGTGGCCCGCTGGCCGCGCTGGGC 120258 Query 48489 GCCACCATTGCCGGGATGGGGGTTGAATCAGAAATTGCCTCAACCGGCATCAAAAACTTC 48548 |||||| | ||||| ||||| | || || || | | | ||||||||||| ||| | Sbjct 120257 GCCACCGTGGCCGGTATGGGCATCGAGTCGGAGGTGTCTGCCACCGGCATCAAGAACATG 120198 Query 48549 ATGCT 48553 |||| Sbjct 120197 CTGCT 120193 Score = 123 bits (136), Expect = 1e-23 Identities = 213/307 (69%), Gaps = 3/307 (1%) Strand=Plus/Minus Query 8659 GACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCCGGTCAGATGATG 8718 ||||| | ||| ||||| ||||| || || |||| || |||||| | || |||| ||| Sbjct 120497 GACGCGGCGAAGATGGGCGTGGCCTTCGACACCAGCGCTGAAGAGGCGGGCCAGACCATG 120438 Query 8719 GCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTCCTGGCCGATAAA 8778 || ||||| || || ||||| || ||||| |||||||| || |||||||| || Sbjct 120437 GCCACCTGGCGCACCGCCTTCAAGATGGGCCAGGACGACGTGGTCGTGCTGGCCGACAAG 120378 Query 8779 ATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCTGATATCGTGACG 8838 |||||||| ||||| || ||||| || || | | ||||||| || | |||| Sbjct 120377 ATCAACTACCTGGGCAACACCGGTCCCGCCAGCGTCCAGAAGATCAGCGAGGTGGTGAAC 120318 Query 8839 CGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATTGCCGCGATGGGC 8898 || || || |||| || | || || || ||| ||| | |||||| ||||| Sbjct 120317 CGCATCGGCGCGCTCGGTGAGGTGGCTGGCCTGGGCAGTGGCCCGCTGGCCGCGCTGGGC 120258 Query 8899 GCCACCATTGCCGGGATGGGGGTTGAATCAAGAAATTGCCT-CAACCGGCATCAAAAACT 8957 |||||| | ||||| ||||| | || || | | || || | ||||||||||| ||| Sbjct 120257 GCCACCGTGGCCGGTATGGGCATCGAGTC--GGAGGTGTCTGCCACCGGCATCAAGAACA 120200 Query 8958 TCATGCT 8964 | |||| Sbjct 120199 TGCTGCT 120193 >seq846 Length=12855 Score = 87.8 bits (96), Expect = 9e-13 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65760 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGCCTTTTTAC 65819 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 7189 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 7248 Query 65820 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 65879 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 7249 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 7308 Query 65880 TATATCGACAAAAATAAGATCTCCCGGTTCAATTGTTGGCGCCATGCTGTCACCGCGCAC 65939 ||||| || || | ||||| || ||||| || ||| | |||||||||||||||||| Sbjct 7309 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 7368 Query 65940 GTTAAT 65945 |||||| Sbjct 7369 GTTAAT 7374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247444052693992