Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq103 336 4e-90 seq140 205 2e-50 seq25 187 5e-45 seq759 89.7 1e-15 >seq103 Length=5517 Score = 336 bits (372), Expect = 4e-90 Identities = 275/333 (83%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| |||||| |||||||||| |||||| | | | || |||||||||||||||| Sbjct 2897 CCCGAACAGGGGAGTGAAATAGAACCTGAAACTGTGTGCTTACAAGCGGTCGGAGCGTCC 2956 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | |||||||||||||||||||||||||||||||||||||| || || | || || Sbjct 2957 AGGTGGCGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTCTCTGGCAAG 3016 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| | || || | || | |||||| ||||||||| || || |||||| ||| Sbjct 3017 GTTAAGTGTTTAAGACACGG-ATCCGAAGCGAAAGCGAGTCTGAATAGGGCGTATAGTCA 3075 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | || | ||||||||||||||||||||||||||| | |||||||||| |||||||| | Sbjct 3076 GGGGAGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGGTTGAAGGTGCGGTAACAC 3135 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||| Sbjct 3136 GTACTGGAGGACCGAACCGATAAACGTTGAAAAGTTTCCGGATGATCTGTGGGTAGGGGT 3195 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||| ||||||||||||||||||||||||| Sbjct 3196 GAAAGGCTAATCAAACTGGGAAATAGCTCGTAC 3228 >seq140 Length=166553 Score = 205 bits (226), Expect = 2e-50 Identities = 250/337 (74%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||| ||| |||||| ||| |||||||| | || |||||| Sbjct 1834 CCCGACAAGGGGAGTGAAAGAGATCCTGAAACCGAATGCCTACAAACAGTTGGAGCCCAA 1775 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| |||||| |||| ||||||| |||||| | | ||| |||||| | || | Sbjct 1774 GATTTGTTCTGGGTGACAGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTC-TGACGA 1716 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 || || |||| | || || ||| || || ||||||||| || ||||||||| Sbjct 1715 GCAAGCTTAAA-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTT 1661 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| || | ||||| ||||||| |||||||| ||| ||||||||||||| || Sbjct 1660 CAGTTCGTCGGATTAGACCCGAAACCAAGTGATCTAGCCATGAGCAGGTTGAAGGTAAGG 1601 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| | | |||||||||||||| | | |||| || || |||||||| | || | Sbjct 1600 TAACACTTACTGGAGGACCGAACCCGCATCTGTTGCAATAGATTGGGATGACTTGTGGCT 1541 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||| ||| |||||| || Sbjct 1540 AGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGT 1504 >seq25 Length=2002 Score = 187 bits (206), Expect = 5e-45 Identities = 238/325 (73%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || ||||| || | ||| Sbjct 835 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCAGACTTTGTTC 894 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| |||| Sbjct 895 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 953 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 954 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 1008 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | || Sbjct 1009 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 1068 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||||||| |||||||| | || | || |||||||| Sbjct 1069 GAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGG 1128 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | |||||| || ||| |||||| || Sbjct 1129 CTAATCAAGCTCGGAGATAGCTGGT 1153 >seq759 Length=755 Score = 89.7 bits (98), Expect = 1e-15 Identities = 158/228 (69%), Gaps = 17/228 (7%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| |||| Sbjct 246 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACC----TTCG 191 Query 71 G---TGACGGCGTGCCTTTTGCA----TAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | |||| |||| ||||||| | ||||| | | ||| ||| | || ||| || Sbjct 190 GGTGTGACTGCGTACCTTTTGTANNTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAG 132 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | | || ||||| || |||| |||| |||||| ||||| ||||| Sbjct 131 GTTAACCGTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTG 77 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG 231 || ||||| ||||||| |||||||| ||| | ||||||||||| Sbjct 76 CAGGGTATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972525407744