Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq103 140 3e-31 seq25 98.7 9e-19 seq140 89.7 5e-16 seq10025 75.2 1e-11 >seq103 Length=5517 Score = 140 bits (154), Expect = 3e-31 Identities = 139/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| || | |||||||| ||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 2407 GCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGC 2466 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT 121 | |||||||| ||| ||| ||||| ||||| |||| ||||||||||| |||| | | Sbjct 2467 TCCGGGGATTAGCAAATATGAATTAATCCGGAGATTTCCGAATGGGGAAACCTGGCTAGT 2526 Query 122 TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || || | | | || || ||| || ||||||||||||||||||| Sbjct 2527 TGAAGACTAGTCGTA---CAAAG---TACGCAAACCTGCTGAACTGAAACATCTAAGTA 2579 >seq25 Length=2002 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 369 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 428 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 429 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 482 >seq140 Length=166553 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 2468 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 2409 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| |||||||| ||| ||||||||||| ||||| Sbjct 2408 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 2362 >seq10025 Length=697 Score = 75.2 bits (82), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 ||| ||||||||||||| ||| ||| |||| ||||||||||||| || |||||| ||| Sbjct 141 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTAGCAATCTGCGATAAG 199 Query 61 CTACGGGG-ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||||| | || | | | |||||||| | | ||||||||||| ||||| Sbjct 200 CCTCGGGGAACTGATAAGCAAGTTTTGATCCGAGGGTGTCCGAATGGGGAAACCC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476669619487