Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq9976 255 8e-66 seq1498 241 2e-61 seq140 172 8e-41 seq103 138 2e-30 >seq9976 Length=1608 Score = 255 bits (282), Expect = 8e-66 Identities = 197/229 (86%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 27 TCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCG 86 ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 424 TCAGTCCGTATACATCGTCTTAC-GACTTCGCACGGACCTGTGTTTTTAGTAAACAGTCG 482 Query 87 CTTCCCTCTATTCTCTGCGACCACCACCAGCTCA------ACACGTCGTTCACCAG-CAG 139 |||| | || |||||||| || | |||||||| | | ||||| |||||| ||| Sbjct 483 CTTCTCACTGGTCTCTGCGGCCCCACCCAGCTCAGACAGTAAATGTCGT-CACCAGACAG 541 Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||| | Sbjct 542 -GGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATAGTTATC 600 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 601 TCGATCGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 649 >seq1498 Length=998 Score = 241 bits (266), Expect = 2e-61 Identities = 209/254 (82%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||| ||| | | ||| |||| Sbjct 877 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTGC-GACTTGGCAC 819 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC--T 118 |||||||||||||||||||||||||||| ||| ||| |||||||| || ||| || | Sbjct 818 GGACCTGTGTTTTTAGTAAACAGTCGCTACCCACTAGTCTCTGCGGCCTCCAAACGCTTT 759 Query 119 CAACACGTCGTTCACCA---GCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 | | || || | | || | ||| ||||||||||||||||||||||| |||||| Sbjct 758 CGGGA-GTAAATCCCTATACGCCGAAGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTT 700 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||||||||| ||| | ||| | |||| |||||||||||||||||||||| Sbjct 699 GCCGAGTTCCTTAACCACGATTCTCTCGATCTCCTTGGTATTCTCTACCTGACCACCTGA 640 Query 235 GTCGGTTTACGGTA 248 |||||||| |||| Sbjct 639 GTCGGTTTGGGGTA 626 >seq140 Length=166553 Score = 172 bits (190), Expect = 8e-41 Identities = 189/249 (76%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| || ||||||| Sbjct 565 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTT-GCGACTTCGCAG 623 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||||| ||| || ||| ||| ||| ||| Sbjct 624 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCAC------- 676 Query 121 ACACGT-CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || | ||| || || || | ||||| ||||||||||| | || |||||||| Sbjct 677 ATACTTGCGTACATAAG----GGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGA 732 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | | |||||| | | | |||||| |||||||||||| | ||||| ||||||| Sbjct 733 GTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCAGTGTCGG 792 Query 240 TTTACGGTA 248 |||| |||| Sbjct 793 TTTAGGGTA 801 >seq103 Length=5517 Score = 138 bits (152), Expect = 2e-30 Identities = 180/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 4247 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGATTTT-GCAA 4189 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | || ||| ||||| ||| | Sbjct 4188 AGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTGA 4139 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | |||||| ||||||||||||||||||| ||||||||||||||| Sbjct 4138 TA---TTGCT-ACCAGCG------CCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAG 4089 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| ||||| ||| | |||||| ||||||| || | |||||||||||| Sbjct 4088 TTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCTTCCCGGATACCTGTGTCGGT 4029 Query 241 TTACGGTA 248 || ||||| Sbjct 4028 TTGCGGTA 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694210116971