Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq103 138 1e-30 seq9976 89.7 5e-16 seq1498 87.8 2e-15 seq140 82.4 8e-14 >seq103 Length=5517 Score = 138 bits (152), Expect = 1e-30 Identities = 138/175 (79%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || || Sbjct 4024 CGCAAACCGACACAGGTATCCGGGAAGAGAATTCTAAGGTGCTCGAGTGAATCATGGCTA 4083 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| ||||| | || || ||| | Sbjct 4084 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCT-GGTAGCAATATCA 4141 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| || Sbjct 4142 -GCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAA 4195 >seq9976 Length=1608 Score = 89.7 bits (98), Expect = 5e-16 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || ||||||||||| | ||| || | ||||||| Sbjct 644 CAAACCGACACAGGTGGTCAGGTAGAGAATACTAAGGCGATCGAGATAACTATGGTTAAG 585 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 ||||| |||||| || ||| |||||||||||| || ||| Sbjct 584 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 546 >seq1498 Length=998 Score = 87.8 bits (96), Expect = 2e-15 Identities = 134/195 (69%), Gaps = 22/195 (11%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| ||| || || ||| ||| || |||| |||| | | ||| ||||| ||||||| Sbjct 631 CAAACCGACTCAGGTGGTCAGGTAGAGAATACCAAGGAGATCGAGAGAATCGTGGTTAAG 690 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-------------- 129 ||||| |||||| || ||| |||||||||||| || ||| ||| | Sbjct 691 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCTTCGGCGTATAGGGATT 750 Query 130 ----CCAGAAA----TGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAAC 181 || |||| | ||||| |||||||| ||| || |||||||| |||||| Sbjct 751 TACTCCCGAAAGCGTTTGGAGGCCGCAGAGACTAGTGGGTAGCGACTGTTTACTAAAAAC 810 Query 182 ACAGGGCTGTGCCAA 196 ||||| | ||||||| Sbjct 811 ACAGGTCCGTGCCAA 825 >seq140 Length=166553 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| ||||| || | | ||| || |||| |||||||||||| ||| || | |||| Sbjct 795 AAACCGACACTGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACTGCGTTGAAGG 736 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 |||| |||||| || | |||||||||| | || | | ||| ||| || ||| Sbjct 735 AACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCTTATGTACGCAAGTATG 676 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| ||| ||| ||| || |||||||| ||||||||||||||| ||| || Sbjct 675 TGAGGGTGGCACAGACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAA 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531054743858