Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq140 334 2e-89 seq1498 293 6e-77 seq103 284 3e-74 seq552 159 9e-37 seq9976 102 2e-19 >seq140 Length=166553 Score = 334 bits (370), Expect = 2e-89 Identities = 320/408 (78%), Gaps = 25/408 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 393 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 452 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 512 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | |||||||||||||||||| ||||||||||| | ||||| || ||| | | Sbjct 513 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAAAGCTT-GC--------ACCTCTCC 563 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 564 TCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAG 623 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| | |||||| | | | ||| || ||| Sbjct 624 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACATACTTG 683 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTTG 371 | || | | | |||| ||||| ||||||||||| ||| | |||| Sbjct 684 C-------GTACATAAGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTTG 728 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 || ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 729 CCGAGTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 776 >seq1498 Length=998 Score = 293 bits (324), Expect = 6e-77 Identities = 284/361 (79%), Gaps = 12/361 (3%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 935 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC 187 |||||| |||||||||||||||||| ||||||||||| | ||||| || ||| Sbjct 934 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAAAGCTT-GC--------ACC 884 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | | |||||||||| ||||||||||||||||| || ||||| || ||| || || Sbjct 883 TCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTGCGACTT 824 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGA 307 ||| | ||||||||||| ||||||||||| | || || ||| || || || Sbjct 823 GGCACGGACCTGTGTTTTTAGTAAACAGTCGCTACCCACTAGTCTCTGCGGCCTCCAAAC 764 Query 308 GCTTAC-GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 |||| | |||| || ||| | | | ||| | ||||||||||||||||||| | | Sbjct 763 GCTTTCGGGAGTAAATCCCTATACGCCGAAGGCCCCCCTTCTCCCGAAGTTACGGGGGCA 704 Query 367 TTTTGCCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCA 425 ||||||| |||||||| || ||| ||||||| | | ||||||||||||||||| |||| Sbjct 703 TTTTGCCGAGTTCCTTAACCACGA-TTCTCTCGATCTCCTTGGTATTCTCTACCTGACCA 645 Query 426 C 426 | Sbjct 644 C 644 >seq103 Length=5517 Score = 284 bits (314), Expect = 3e-74 Identities = 318/424 (75%), Gaps = 32/424 (8%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | || ||||||| | || ||||||||| ||| ||| || |||||||| Sbjct 4441 GCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGAG-CTCATGGCTGAGACAGC 4383 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4382 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4323 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||| | |||||| ||| Sbjct 4322 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAATGCTTCGGTTTA 4263 Query 181 --GCTAAC--CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236 ||||| ||| || |||||||||| |||||||||||| |||| || ||||| || Sbjct 4262 ACCCTAACATCCCCTC--TTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCA 4205 Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 |||||| |||||| || ||||||||| ||||||||||| ||||| | || | Sbjct 4204 TCTTTCGATTTTGCAAAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGC 4145 Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 | | ||| || | ||| |||| |||||||||||||| Sbjct 4144 GGC-----TGATATTGC-------------------TACCAGCGCCCCTTCTCCCGAAGT 4109 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||| | ||| ||||||| |||||||| || ||| ||| ||| |||| | ||||||| Sbjct 4108 TACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCT 4049 Query 417 ACCC 420 ||| Sbjct 4048 TCCC 4045 >seq552 Length=650 Score = 159 bits (176), Expect = 9e-37 Identities = 88/88 (100%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 29 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGG 88 |||||||||||||||||||||||||||| Sbjct 28 GCCGCCATCGTTACGCCATTCGTGCAGG 1 >seq9976 Length=1608 Score = 102 bits (112), Expect = 2e-19 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 225 CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGG 284 || ||||| || ||| || || ||| | ||||||||||| ||||||||||| | Sbjct 429 CCGTATACATCGTCTTACGACTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCTC 488 Query 285 CCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTC-CTTCACCCTCACCGGCGCAC 343 ||||| ||| || || |||| | || || | | ||||| ||| | | Sbjct 489 ACTGGTCTCTGCGGCCCCACCCAGCTCAGACAGTAAATGTCGTCACCAGACAGGGCCCCC 548 Query 344 CTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGC 403 |||||||||||||||||| | | ||||||| |||||||| || |||| |||| | ||| Sbjct 549 CTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATAGTTATCTCGATCGC 608 Query 404 CTTGGTATTCTCTACCCAACCAC 426 ||| |||||||||||| ||||| Sbjct 609 CTTAGTATTCTCTACCTGACCAC 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260444113984