Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq554 334 2e-89 seq140 306 8e-81 seq103 172 1e-40 seq5 116 8e-24 seq9766 96.9 7e-18 >seq554 Length=647 Score = 334 bits (370), Expect = 2e-89 Identities = 227/255 (89%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 82 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 141 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 313 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAG 254 Query 142 ACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTA 201 ||||| |||||||||||||||||||| ||| ||||| | |||||||||||||||||| | Sbjct 253 ACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAATCCGACATC 194 Query 202 GGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261 ||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct 193 GGCTCATCTATCCGCGCAAGGCCCGAAGGTCCCCTGCTTTCACCCGAAGGTCGTATGCGG 134 Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTC 321 ||||||||| |||||| |||||||||||||| | ||| ||||||| | | ||| ||| Sbjct 133 TATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAGGTAGATTCCGATGTATTCCTC 74 Query 322 ACCCGTCCGCCGCTC 336 ||||||||||| ||| Sbjct 73 ACCCGTCCGCCACTC 59 >seq140 Length=166553 Score = 306 bits (338), Expect = 8e-81 Identities = 270/336 (80%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 4387 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 4444 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 4445 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 4504 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 4505 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 4564 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||| || |||||||| || || | | ||| Sbjct 4565 CCAACTAGCTAATCCAACGCGGGCTCATC--------CATCTCCGATAAAT------CTT 4610 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 ||||||| ||||||||| |||||||||| ||||||| |||||| || | | Sbjct 4611 TCTCCCGAAGGACGTATACGGTATTAGCACACGTTTCCATGCGTTATTCCGTAGAGATGG 4670 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||| | || ||||||||||||| ||||||| Sbjct 4671 GTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 4706 >seq103 Length=5517 Score = 172 bits (190), Expect = 1e-40 Identities = 138/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| || | |||||| |||||||||| ||||||||||| Sbjct 718 CACGCGGCAT-GGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTC 660 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| | ||||||||||||| | | Sbjct 659 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCT 600 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | ||||||||||||||| ||| ||||| | ||||||||||||| Sbjct 599 AGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 555 >seq5 Length=11203 Score = 116 bits (128), Expect = 8e-24 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||| ||| |||||||||||||||||||||||||||| | | ||| | Sbjct 3493 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCCT--CTAACGAGGTT 3550 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 |||| | | ||| ||||| |||| |||||||||||| |||| || || | ||| | | Sbjct 3551 GGACTTTATTTCAATTCCAATGTGGCTGATCATCCTCCCAGATCAACTATGAATCCTTGG 3610 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||| | || ||||| ||||||| ||||| Sbjct 3611 CTTGTTAGGCTTTTACCCTTCCAACTACCTAAT 3643 >seq9766 Length=280 Score = 96.9 bits (106), Expect = 7e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 |||||||||| |||||||| | | ||| |||||||| || | ||| ||| |||||||| Sbjct 1 GTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGACGCCTTGG 60 Query 166 TGAGCCATTACCTCACCAACTAGCTAAT 193 |||||||||||||||||||| |||| || Sbjct 61 TGAGCCATTACCTCACCAACAAGCTGAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071697406560