Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq10910 405 8e-111 seq6964 114 2e-23 seq178 113 7e-23 >seq10910 Length=1973 Score = 405 bits (448), Expect = 8e-111 Identities = 247/261 (95%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||||| Sbjct 1323 CGATGCATGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGAGCAGTTT-CGTCCAGGCCC 1265 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1264 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGTTGCAGCGAGCAATCGCGGTCG 1205 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1204 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 1145 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 1144 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGGCAGCTTCCGAG 1085 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 |||||||||||||| |||||| Sbjct 1084 CGAGTCTGCTTGGCGGCTTCG 1064 >seq6964 Length=7543 Score = 114 bits (126), Expect = 2e-23 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| |||||||||||||| | || ||||| ||||| || |||| ||||| ||||| Sbjct 6115 GCCCGGCGCCGGCGCTTCTTCGACCACTTTCTGATGACGGCGCTGCATGGAGCAGTCGCG 6056 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 || |||| | ||| |||| ||||| || || | ||| || || | ||| | ||| || Sbjct 6055 TTCAGCCAGATAGATCGCGTTACCCTGACCATCCGCCAGCACCTGAATTTCAATGTGGCG 5996 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCAT 209 |||||| |||||| || |||| ||||||||| Sbjct 5995 TGGGTTTTCCAGGTATTTCTCCATGTAGACCAT 5963 >seq178 Length=56450 Score = 113 bits (124), Expect = 7e-23 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129 ||||||||| ||||||||||| || || |||| |||||| ||||| |||||||| || Sbjct 6227 GCTTCTTCCCAGACCTTCTGGTGGCGGCGCTGCAACGAGCAGTCGCGTTCGCCCAGATGC 6286 Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189 | ||| | |||| ||||||| || || || ||||| | ||||| || || |||| Sbjct 6287 ACGGCCTTGCCCATGCCGTCGCCCATCACCTGAACTTCGATATGACGCGGCTTCTGCAGG 6346 Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 |||||||| | |||||| | || || ||| || ||||| ||||||||||| Sbjct 6347 TACTTTTCGATGTAGACGGCGTC--GTCGCCAAAGGCTGCGCCGGCTTCGGAGCG 6399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735798741490