Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq2601 461 3e-127 seq24352 439 9e-121 seq15233 120 1e-24 >seq2601 Length=18462 Score = 461 bits (510), Expect = 3e-127 Identities = 443/564 (79%), Gaps = 3/564 (1%) Strand=Plus/Plus Query 40 TTTCGAGGCGTTCGCCGAGAAACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCC 99 ||| |||||||| || ||| ||||| |||||||| | |||| || | |||||||| Sbjct 4317 TTTAGAGGCGTTGGCGCTGAAGCGGCTA-ACGAAGGACT-GCAGGTCCGCAATCTGCGCT 4374 Query 100 TTCTTTCTTGGCGTTGTCCGACAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTA 159 || ||||||||||||||||| |||||| |||| || | |||||| ||| |||||||||| Sbjct 4375 TT-TTTCTTGGCGTTGTCCGCCAGCAGACGCTCACGCGCCTGGGTGGCCGCGGTCATGTA 4433 Query 160 CTCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGT 219 ||||||||||||||||| ||| |||||||||||||||||| || || ||||||||||| Sbjct 4434 TTCGTCGTAGTTGCCCGGATACACGCGCAGCTCGCCGTAGTCGAGATCCGCCATGTGGGT 4493 Query 220 ACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTG 279 || || |||||||||||||||||||||| || ||||| ||||| |||| || | Sbjct 4494 GCAGACCATGTTCAGGAAGTGACGGTCGTGCGAAATGATAATCATGGTGCTGTCGCGATC 4553 Query 280 GGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTC 339 | |||| | | ||||||||||| ||||||| |||||||| || |||||||||||| || Sbjct 4554 GTTCAGCGTCTGCTCCAGCCAGCGAATGGTGTCGATGTCCAGGTTGTTGGTCGGTTCATC 4613 Query 340 GAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCA 399 ||||| ||| | || |||| ||||||||||||||| ||||||| || ||||||||||| Sbjct 4614 GAGCAGCAGGATATCCGGATTGGAAAACAGCGCCTGCGCCAGCAGGACGCGCAGCTTCCA 4673 Query 400 GCCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAG 459 |||||| | |||||||||||||| || | ||||| || | |||||| || | || || Sbjct 4674 GCCCGGCGCGACTTCGCTCATCGGGCCATAATGCTGTTCAACCGGAATGCCGACGCCGAG 4733 Query 460 CAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTC 519 |||||| || ||||| || | ||| || | |||||||||||| ||| | | | | ||| Sbjct 4734 CAGCAGTTCGCCGGCGCGCGCTTCCGCCGAGTAGCCGTCCATTTCGCCATATTTGACTTC 4793 Query 520 CAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATC 579 ||| |||||||| ||| |||||||||||||| || | || | ||| |||| ||| Sbjct 4794 CAGGTCGGCCACTTTGTAGCCATCTTCTTCGCTCATCTCAGCGAGGGCGTAGATACGATC 4853 Query 580 ACGCTCGGCCTTGACCTTCCACAG 603 ||||| ||| || | |||||| Sbjct 4854 GCGCTCCTGCTTCACTTCCCACAG 4877 >seq24352 Length=378 Score = 439 bits (486), Expect = 9e-121 Identities = 288/315 (91%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 290 TTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGC 349 ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || | Sbjct 377 TTTTCCAGCCAGCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAAC 318 Query 350 ACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGAC 409 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 317 ACTTCCGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCTGGTGAC 258 Query 410 ACTTCGCTCATCGGACCGAAGTGCTGCTCCA-GCGGAATACCCAGACCCAGCAGCAGCTC 468 ||||| |||||||| ||| ||||||||| | || || ||||||| |||||||||| ||| Sbjct 257 ACTTCACTCATCGGGCCGTTGTGCTGCTCGATGCCGA-TACCCAGGCCCAGCAGCAACTC 199 Query 469 ACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGC 528 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 198 ACCGGCGCGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAAGTCGGTTTCCAGCTCGGC 139 Query 529 CACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGC 588 ||||||||||||||| |||||| |||| |||||||||||||| || | || |||||||| Sbjct 138 CACGGCCATGCCGTCGTCTTCGGTCATCTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGC 79 Query 589 CTTGACCTTCCACAG 603 ||||||||||||||| Sbjct 78 CTTGACCTTCCACAG 64 >seq15233 Length=807 Score = 120 bits (132), Expect = 1e-24 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 518 TCCAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCA 577 |||||||||||||||||||||||||| |||||| |||| |||||||||||||| || | Sbjct 1 TCCAGCTCGGCCACGGCCATGCCGTCGTCTTCGGTCATCTCCGGCAGCGAGTAGATGCGG 60 Query 578 TCACGCTCGGCCTTGACCTTCCACAG 603 || ||||||||||||||||||||||| Sbjct 61 TCGCGCTCGGCCTTGACCTTCCACAG 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881052283292