Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq25 654 0.0 seq759 369 9e-100 seq140 325 1e-86 seq103 279 1e-72 seq17903 179 9e-43 >seq25 Length=2002 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1120 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 1063 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 1062 GT-GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 1008 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1007 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 949 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 948 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACA 890 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 AAGTCTGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 830 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 770 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 712 >seq759 Length=755 Score = 369 bits (408), Expect = 9e-100 Identities = 294/346 (85%), Gaps = 11/346 (3%) Strand=Plus/Plus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137 |||||||||||||| || |||||| || ||||| ||||||||| ||| || ||| ||| Sbjct 30 TTCAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGCAACTTAACG 86 Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAA 197 ||| ||||||||| ||| | || || ||||||||| ||||||| ||| || || ||| Sbjct 87 CCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-GCTACAGAAT 144 Query 198 ATAAGTCGCTGACCCATTATA----CAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCC 253 ||||||||||||||||||||| |||||||||||||||||| | || ||| |||| Sbjct 145 ATAAGTCGCTGACCCATTATANNTACAAAAGGTACGCAGTCACACCCGAAGGTG--CTCC 202 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 ||||||||||||| | ||||||||||| ||| ||||||||||||| |||||||||||||| Sbjct 203 CACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTC 262 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGA 373 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 263 GCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGA 322 Query 374 TGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||||||||||||||| | | |||| ||| ||||||| Sbjct 323 TGGTCCCCCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTC 368 >seq140 Length=166553 Score = 325 bits (360), Expect = 1e-86 Identities = 330/416 (79%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| || | || || |||| | | |||||||||||||||| ||| ||| Sbjct 1543 CCACAAGTCATCCCAAT--CTATTGCAACAGATGCGGGTTCGGTCCTCCAGTAAGT-GTT 1599 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| |||||||| ||| || |||||| | ||||| |||||||| | || | Sbjct 1600 ACCTTACCTT-CAACCTGCTCAT-GGCTAGATCACTTGGTTT-CGGGTCTAAT-CCGACG 1655 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 1656 AACTGAACGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTACACCTACCGGTTTAAGCTT- 1713 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG 245 || | | | |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1714 GCTCGTCAGACTAAGTCGCTGACCCATTATACAAAAGGTACGCTGTCACCCAGAACAAAT 1773 Query 246 --TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||||| |||| ||||| |||| |||||||||||||| |||||||||||| ||| Sbjct 1774 CTTGGGCTCCAACTGTTTGTAGGCATTCGGTTTCAGGATCTCTTTCACTCCCCTTGTCGG 1833 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| |||||| |||||||||||||||||| |||| |||||||||| || |||| |||| Sbjct 1834 GGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCATGCACGAGTACTTAG 1893 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| ||||| |||||| |||||||| |||| |||| ||| ||||||| Sbjct 1894 GCTTGGAGAGTGGTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTC 1949 >seq103 Length=5517 Score = 279 bits (308), Expect = 1e-72 Identities = 312/402 (78%), Gaps = 19/402 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 3187 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 3131 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| ||||||| |||| || |||||| | ||||| || ||||| |||| Sbjct 3130 ACCGCACCTT-CAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCCCCT- 3075 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAAGC 184 ||||| |||||||| | ||||||||||| |||| || ||| | || | |||| | Sbjct 3074 GACTATACGCCCTATTCAGACTCGCTTT-CGCTTCGGATCCGTGTCTTAAACACTTAACC 3016 Query 185 TTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || |||| ||| | ||| ||| | | |||||| ||||||| |||| ||||| | || Sbjct 3015 TT-GCCAGAGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACGCCACC- 2958 Query 244 AGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| ||||| || ||||||| ||| || |||||||| |||||||||||||||| | | Sbjct 2957 --TGGACGCTCCGACCGCTTGTAAGCACACAGTTTCAGGTTCTATTTCACTCCCCTGTTC 2900 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 2899 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTT 2840 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTC 403 |||||| ||||||| || || |||| |||| | |||| Sbjct 2839 AGCCTTACCGGATGGTGCCGGCAGATTCCCACAAGGCGTCTC 2798 >seq17903 Length=272 Score = 179 bits (198), Expect = 9e-43 Identities = 182/227 (80%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| || | ||||| |||| | || ||||||| |||||||| | |||| Sbjct 48 CACAGCTCATCCCCGT--CTTTTGCAACAGACGTGGGTTCGGGCCTCCAGTACCT-GTTA 104 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 | ||||| || |||| |||| | |||||| |||||||| |||||||| | ||| ||| Sbjct 105 CGGCACCTT-CACCCTGGCCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 160 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189 |||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| || Sbjct 161 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 218 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 236 ||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 219 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241249533568