Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq140 217 3e-54 seq103 181 2e-43 seq9766 158 2e-36 seq554 150 4e-34 seq5 84.2 4e-14 >seq140 Length=166553 Score = 217 bits (240), Expect = 3e-54 Identities = 231/304 (76%), Gaps = 17/304 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 4419 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 4478 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 4479 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 4538 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| |||||| |||| || |||| || Sbjct 4539 CGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCT 4598 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||||||||||| || ||| || | ||| |||||||||| | Sbjct 4599 CCGATAAATCTTT-CTC-CCGAAGGACG--------------TATACGGTATTAGCACAC 4642 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||||||||| || || || || | |||| |||||||||||||| || Sbjct 4643 GTTTCCATGCGTTATTCCGTAGAGATGGGTAGATT-CCCACGCGTTACTCACCCGTCTGC 4701 Query 301 CACT 304 | || Sbjct 4702 CGCT 4705 >seq103 Length=5517 Score = 181 bits (200), Expect = 2e-43 Identities = 225/306 (74%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| || ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | ||| |||||||| | ||| || Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | | ||||||| ||||| ||| ||||||||| Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| |||| || | || |||| ||||| || ||||||||| ||| | | Sbjct 533 CCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTATGCGGTCTTA--ATCC 476 Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | |||| | ||| || || |||| ||||||| ||| ||||| ||||||| | Sbjct 475 GAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 416 Query 299 GCCACT 304 |||||| Sbjct 415 GCCACT 410 >seq9766 Length=280 Score = 158 bits (174), Expect = 2e-36 Identities = 179/235 (76%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 |||||||||||||| |||||||| ||| |||||||| ||||||||| ||| || ||||| Sbjct 1 GTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGACGCCTTGG 60 Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCT 191 || || |||| ||||||||| | || || ||||||||||||||| | ||| || ||| Sbjct 61 TGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCCCAACCGA-AATTCT 119 Query 192 TT--GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAA 249 || | | || | |||| || | ||| ||| | ||||||| |||||||| Sbjct 120 TTCCAGACGCAG-ACCATGCGGTCACGTCACA-TATCCAGTATTAGACGCCGTTTCCAGC 177 Query 250 CGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||| ||| | | ||||||||||||||||||||||||||||| ||||||| Sbjct 178 GCTTATCCCAGAGTCAGGGGCAGGTTGCTCACGTGTTACTCACCCGTTCGCCACT 232 >seq554 Length=647 Score = 150 bits (166), Expect = 4e-34 Identities = 190/258 (74%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 48 CTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 ||||||||||||||||||||| |||||||||||| ||| |||||| | ||| |||||||| Sbjct 313 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAG 254 Query 108 TCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCG 167 || ||||| |||||||| |||||||||| ||| | | ||||||| |||||| | | Sbjct 253 ACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAATCCGACATC 194 Query 168 AGCCCATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATG 226 || ||||| || ||| | | |||| || | || || | |||| Sbjct 193 GGCTCATCTATCCGCGCAAGGCCCGAAGGTC---CCCTGCTTTCACCCGAAGGTCGTATG 137 Query 227 CGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTT 286 |||||||||||| |||||| ||||||| || | | ||||| || || | | || || Sbjct 136 CGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAGGTAGATT-CCGATGTATT 78 Query 287 ACTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 77 CCTCACCCGTCCGCCACT 60 >seq5 Length=11203 Score = 84.2 bits (92), Expect = 4e-14 Identities = 111/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | || | | |||||| |||||| |||||||||||||| | | ||| | Sbjct 3493 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCCT--CTAACGAGGTT 3550 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || | | | ||| | |||||||||| | ||| |||| ||| | ||| ||| | || Sbjct 3551 GGACTTTATTTCAATTCCAATGTGGCTGATCATCCTCCCAGATCAACTATGAATCCTTGG 3610 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | |||| ||| | ||||||||||||| Sbjct 3611 CTTGTTAGGCTTTTACCCTTCCAACTACCTAAT 3643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998118181632