Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq11321 515 9e-144 seq6 232 2e-58 seq38 178 3e-42 >seq11321 Length=3248 Score = 515 bits (570), Expect = 9e-144 Identities = 351/395 (89%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 CGATGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 1319 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1318 CTGTGGCGCGGTCTCGGGTTTCCACGCACTGATCTCCTCGGGCACCACGCCCAAGTTGCT 1259 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 |||||||| | || |||||||||||||| |||||||||||| |||||||||||||||| Sbjct 1258 GGCCAGTGAAGGGCACGCCCGTTACATCGGCTACGGCGGCATGTTGATGGAGTCGTTCGT 1199 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct 1198 GGCCATCATGGCGATGGTTGCCGCTTCGGTGATCGAGCCAGGGGTGTACTTCGCCATGAA 1139 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || ||||||||| |||||||| | |||||||||||||||||||| || Sbjct 1138 CAGCCCGGCCGCGATTGTCGGCGGTGACGTGGTGGCTGTGGCGCAAACCGTCAGCAGCTG 1079 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| ||||| || || ||| || ||| || ||||| | || ||||| |||| Sbjct 1078 GGGTTTTGCAATTACCCCGGAAGCGTTGCAGGCGGTGGCCCATGACATTGGTGAGTCCAC 1019 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| |||||||| || |||||||| |||| Sbjct 1018 CATCCTGGCCCGTGCCGGTGGTGCGCCGACCCTGG 984 >seq6 Length=24410 Score = 232 bits (256), Expect = 2e-58 Identities = 199/246 (81%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 || || |||||| || ||||||| |||| ||||||||||||||||| |||||||| ||| Sbjct 11650 GATGGTACCGGCCCGCTGTGGAAAGGCGCGCTGTTCCCGTTCCTGTTTATCACCATCGCC 11591 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 || ||||||||||| |||||||||||||||||| | || ||||||||||| ||| |||| Sbjct 11590 TGCGGCGCGGTCTCCGGTTTCCATGCGCTGATCGCTTCCGGCACCACGCCGAAGCTGCTG 11531 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 |||| || | | ||||||| | || || ||||||| ||||||||||| || || || Sbjct 11530 GCCAACGAAACCGATGCCCGCTTTATTGGCTACGGCGCGATGCTGATGGAATCCTTTGTT 11471 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || |||||||| ||||||| |||||| | || || || || | |||||||| |||||| Sbjct 11470 GCAGTCATGGCGCTGGTTGCGGCCTCGATTATCGAACCGGGTCTCTACTTCGCGATGAAC 11411 Query 242 AGCCCG 247 | |||| Sbjct 11410 ACCCCG 11405 >seq38 Length=6437 Score = 178 bits (196), Expect = 3e-42 Identities = 142/171 (83%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||| || |||||| |||| |||| ||| |||||||||||||||||| |||||||| || Sbjct 171 CGATGGTACCGGCCCGGTATGGACCGGCAACCTGTTCCCGTTCCTGTTTATCACCATCGC 112 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||| ||||||||||| || |||||||||||||||||||| ||||||||||| || || | Sbjct 111 CTGCGGCGCGGTCTCCGGCTTCCATGCGCTGATCTCCTCCGGCACCACGCCGAAAATGTT 52 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGA 171 |||| || ||||| ||| | | ||||| |||||||||||| ||||||| Sbjct 51 GGCCAACGAAAGCCAGGCCTGCTTTATCGGCTACGGCGGCATGTTGATGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161272115168