Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001545.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value seq1746 309 6e-82 seq10232 293 5e-77 seq19105 163 6e-38 >seq1746 Length=5247 Score = 309 bits (342), Expect = 6e-82 Identities = 275/342 (80%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 13 CCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATACATGTAGCACA 72 ||||||||||||||||||| ||||||||||||||||| || || || ||||||||||| Sbjct 2239 CCTGGCGCAGCGCCGGCAGAATGTTCACGTTCGGCGAGGCTTTAGAGTACATGTAGCAGG 2298 Query 73 CGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCATAGGGGTTGG 132 |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2299 CGTAGCCGCTGCAGAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCGTAGGGGTTGG 2358 Query 133 TGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCGACCTCGGCAG 192 | || | | ||||| ||||||||||||||||| ||||| | || || || || ||| Sbjct 2359 TATAGGAGTCGGAGGTGTTGGCCGACGGCAGGTTATAGGGGTGATACCCCACTTC--CAG 2416 Query 193 CG--GCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAGGGGAACGG 250 || ||||| | ||||||||| || || |||||||||||||| || ||||| Sbjct 2417 CGCCGCTTTTTCAAACAGCTGCGCCGACCAGGTGTTTTTCTGCGCCGGCAGCGGGAAGTC 2476 Query 251 GTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAACTGGCCTTT 310 || |||||||||||||| | | |||||| ||||| |||| ||| || | || |||||| Sbjct 2477 GTCCGAGCGGTCCGGGGCGAAGGCGTTGCCGCCGCGGCCTTTGCCGACGACCTTGCCTTT 2536 Query 311 GACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGC 352 || | |||||| ||||| || ||||| ||||||||||| Sbjct 2537 GATCGACCAGGCGGTCCCGGAAGTACCGAATACTTTTTCCGC 2578 >seq10232 Length=2786 Score = 293 bits (324), Expect = 5e-77 Identities = 224/265 (85%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 95 GAAGTTGCACGGGCCCATCTGCGCGCCATAGGGGTTGGTGTACGGCCCCGAGGTATTGGC 154 ||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| || Sbjct 2786 GAAGTTGCACGGGCCCATCTGGGCGCCGTAAGGGTTGGTGTACGGCCCCGATGTATTCGC 2727 Query 155 CGACGGCAGGTTGTAGGGTTTGTAACCGACCTCGGCAGCGGCTTTCTGAAACAGCTGTGC 214 || |||||||||||||| ||||| || || | | ||||| ||||| ||||||||||| Sbjct 2726 GGAAGGCAGGTTGTAGGGCTTGTACCCCACGGCCGTGGCGGCCTTCTGGAACAGCTGTGC 2667 Query 215 GGAGACGGTGTTTTTCTGCGATTCCAAGGGGAACGGGTTGGAGCGGTCCGGGGCATACGG 274 |||||| ||||| ||||||||||||| ||||| | |||||||| ||||| || || || Sbjct 2666 GGAGACTGTGTTCTTCTGCGATTCCAGCGGGAAGTGATTGGAGCGATCCGGTGCGTAAGG 2607 Query 275 GTTGCCACCGCGACCTTCGCCCACCAACTGGCCTTTGACGGTCCAGGCCTGGCCGGAGGT 334 |||||| || ||||||||||||||||| ||||| || |||||||| || |||||||| Sbjct 2606 GTTGCCGCCCTTGCCTTCGCCCACCAACTGACCTTTCACCGTCCAGGCTTGCCCGGAGGT 2547 Query 335 GCCGAAGACTTTTTCCGCGTAGTCG 359 |||||||||||| || || |||||| Sbjct 2546 GCCGAAGACTTTCTCGGCATAGTCG 2522 >seq19105 Length=456 Score = 163 bits (180), Expect = 6e-38 Identities = 105/115 (91%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60 |||| || || ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 342 CGAACTTGGGTTCCTGGCGCAAGGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 401 Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTG 115 |||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct 402 ACATGTAGCAGACATAACCGCTGCAGAAGCCGCAGAAGTTGCACGGGCCCATCTG 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046104632672