Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq2799 526 5e-147 seq678 141 2e-31 >seq2799 Length=5544 Score = 526 bits (582), Expect = 5e-147 Identities = 353/394 (90%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||| || || | Sbjct 4973 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGGCCTACCT 5032 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct 5033 GGTCCTGCTGCTCAGCCAGGCCGTAGCGGAATTTGCGCACGCCCAGGAAGTGTTCCAGCA 5092 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 5093 GGTCAGCGGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTCACGGCCTTGC 5152 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 ||||||||||||| | || ||||| ||||| || |||||||| |||||||||||| | | Sbjct 5153 GGCAGATCTTCGCCAGTTGACGCTCAAGGCCCCGTACACCGGCCTCGCGGGTGTAGAAAC 5212 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | | |||||||||||||| | || | ||||||||||||||||| || |||||||| |||| Sbjct 5213 GAATGATGTCGCGGATCGCGTCGGCATCAAATTCGATCTCGCCTTTTTTCAGGCCGTTGG 5272 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 ||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| Sbjct 5273 CCGCAATCTGCTTGGGCGAGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGT 5332 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||| |||||||| |||||||||||||| Sbjct 5333 AACCCGGCAGACGAATCACCTCCATCCGGTCCAG 5366 >seq678 Length=30763 Score = 141 bits (156), Expect = 2e-31 Identities = 281/404 (70%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||| | ||||||||||| || || ||||||||||| Sbjct 14625 CGATGGTCAGCAGATCGCCGCCCACTTCCGTCCACGCCAGACCGGTCACCTGACCGACGC 14684 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGC---ACGCCGAGGAAGTGCTCCA 117 | | || ||||| |||| ||| ||| |||| |||||||| | | | || Sbjct 14685 GGTTCTCACTATCGGCGCGGCCATAGTCGAA---GCGCTGTACGCCGAGATAATCATGCA 14741 Query 118 GGGAGTCGGCCGTGACCTTCACCGAGA---AGCGTTTT-TCCAGC-GCATGTTCCTTGAC 172 | || |||| | ||| | | |||| ||| |||||| ||| ||| ||| || Sbjct 14742 GATTCTCA-CCGTTAATTTCGATGTGTTTCAGCGATTTATCCAGCAGCA-GTTGCTTAAC 14799 Query 173 CGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGT 232 ||||||||||| | ||| | ||| | |||||||||| ||| || || ||||| || || Sbjct 14800 GGCCTTGCGGCACAGCTTGGAGATTTCACGCTCCAGGCTACGTACCCCCGCTTCCCGCGT 14859 Query 233 GTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAG 292 |||||| || | ||| || || | || | || | | |||||| |||||||| Sbjct 14860 GTAGTAACGAATAATGCCGATAATGGCGCTATCGTCGACGGTCAGCTCGCCTTTCTTCAG 14919 Query 293 GCCATT--GGCCGAAATCTGCTTGGGCGCGAGGT-ACTTGATGGCGATGTTGATCTTCTC 349 | || | || |||||||| ||| || | || | |||||||||| | || || Sbjct 14920 CGCGTTACGTTCG--ATCTGCTTCGGCAGCAGATGACGT-TTGGCGATGTTCAGTTTTTC 14976 Query 350 GTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCA 393 |||||||| || || | || |||||||||||||| ||||||| Sbjct 14977 ATCTTCGGTATAGCCGGAGAGACGAATCACTTCCATACGGTCCA 15020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158073018432