Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq9976 354 2e-95 seq1498 205 2e-50 seq140 203 8e-50 seq25 192 1e-46 seq103 138 3e-30 >seq9976 Length=1608 Score = 354 bits (392), Expect = 2e-95 Identities = 338/442 (76%), Gaps = 44/442 (10%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||||||||||||| |||||| |||||||||||| |||| || ||| || || Sbjct 971 CGGCTACGCCTGTCGGCCTCGTCTTAGGTCCCGACTCACCCTGGGCGGATTAACCTGGCC 1030 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| | |||||||||| | ||| ||| |||| ||||||||||||||| Sbjct 1031 CAGGAACCCTTGGTCATTCGGCGGACGAGTTTCTCACTCGTCTTTCGCTACTCATGCCTG 1090 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG--ACACG 178 |||||||||||| | |||||| | ||||||| || ||||| || | ||||| Sbjct 1091 CATTCTCACTCGTGTGGCCTCCACGGCTAGGTCACCCTGCCGCTTC--CATGGCCACACG 1148 Query 179 ACGCTCCCCTACCCAACCACACAGGT---------------------------------- 204 ||||||||||||||| ||||||| | Sbjct 1149 ACGCTCCCCTACCCATCCACACACCTGCCCAACACTCCGCAGAGTGAAGGGGGGCTATTG 1208 Query 205 ------TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258 |||| ||||||||| || |||| |||||||||||||| ||||||| | |||| Sbjct 1209 CGTGAATGCCGCAGCTTCGGTGGTGTACTTGAGCCCCGCTACATTGTCGGCGCAGGATCA 1268 Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 1269 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTG 1328 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 ||||||| ||| || ||||||||||| ||||| ||| | ||||||| ||||||||| Sbjct 1329 GTTGTCTTCGCGACCCCACATCCTTTTCCACTTAGTACACGCTTAGGGACCTTAGCTGGC 1388 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||| Sbjct 1389 GATCTGGGCTGTTTCCCTCTCG 1410 >seq1498 Length=998 Score = 205 bits (226), Expect = 2e-50 Identities = 224/304 (74%), Gaps = 29/304 (10%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||| Sbjct 304 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGAAGATTAGCTTGACC 245 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| |||| ||||| | ||| ||| ||||| ||||||||||||||| Sbjct 244 CTGGAACCCTTGGTCTTTCGGAGGACGTGTTTCTCACACGTCATTCGCTACTCATGCCTG 185 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | |||||| | | || | || ||||| | ||||||| Sbjct 184 CATTCTCACTCGTGTAGCCTCCACGGCTGGTTTACACCGCCGCTTCGCTGGCCACACGAC 125 Query 181 GCTCCCCTACCCA-------------ACCACACAGG----------------TTGCCACA 211 |||| |||||||| ||||| ||| ||||||| Sbjct 124 GCTCTCCTACCCATCAACACGGCTGGACCACGAAGGCCTACCAATAATGTCAATGCCACA 65 Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 |||||| || ||| ||||||| |||||| ||||||||||||||||||||||||||| Sbjct 64 ACTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAG 5 Query 272 CTAT 275 |||| Sbjct 4 CTAT 1 >seq140 Length=166553 Score = 203 bits (224), Expect = 8e-50 Identities = 303/422 (72%), Gaps = 26/422 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| ||||| | Sbjct 923 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 982 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| || | || |||||||| | Sbjct 983 CAGGAACCCTTGGACTTTCGGCGAGGGAGTCTCTCACTCCCTTTATCGTTACTCATGTCA 1042 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAG-CTTCACCA-CTGACA 176 ||||||||||| | || | ||||| | | |||| | | ||||| | || ||| Sbjct 1043 GCATTCTCACTTCTGAT-ACCTCCAAGAGCCC-TCACGGGTCTCTCTTCAACGGCTTACA 1100 Query 177 CGACGCTCCCCTACCCAACC-----ACAC--AGGTTGC--------CACAGCTTCGGCGG 221 ||||||| ||||| || || | ||||| | ||||||||||| | Sbjct 1101 GAACGCTCCGCTACCACTCCCGGGAACCCGAAGGTTCCAAAGAATCCACAGCTTCGGTGT 1160 Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATT 276 || ||| ||||||| |||||| ||||||| | | ||| |||||||||||| || Sbjct 1161 ATGGCTTTAGCCCCGGTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTT 1220 Query 277 ACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336 |||| ||||| || |||||||||||| |||||||| |||||||||| | | | | || Sbjct 1221 ACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATCCTCA 1280 Query 337 CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||||||||||||| || || |||||||| |||||| || || || ||| |||| |||| Sbjct 1281 CATCCTTTCCCACTTAGCCATAACTTAGGGACCTTAGATGGTGGTCAGGGTTGTTGCCCT 1340 Query 397 CT 398 || Sbjct 1341 CT 1342 >seq25 Length=2002 Score = 192 bits (212), Expect = 1e-46 Identities = 291/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 1719 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 1660 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | | || |||||||| | Sbjct 1659 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTAT-CGTTACTCATGTC 1601 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 1600 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1543 Query 177 CGACGCTCCCCTACCCAACCACAC--AGGTTG---CCACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| | |||| || |||||||| | || || || Sbjct 1542 GAACGCTCCTCTACCGCATCACCCGAAGGTGATACCCGTAGCTTCGGTGTATGGTTTGAG 1483 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||| Sbjct 1482 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAG 1423 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 1422 GGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTT 1363 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 1362 AACCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1318 >seq103 Length=5517 Score = 138 bits (152), Expect = 3e-30 Identities = 151/197 (77%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| |||||||| | | |||||| |||| | |||||| || ||| || ||| | Sbjct 3581 CCATAGCTTCGGTGTACTACTTAATGCCCGTTT-ATTATCCATGCACGATCGCTCGACTA 3523 Query 267 GTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||| ||||||||||||| || || ||||||||||||||||||| |||| | ||||| Sbjct 3522 GTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCT 3463 Query 326 ACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 | |||| ||| || || | | ||| ||| |||| ||| |||||||||||| ||| Sbjct 3462 ATGCAATCGCACCTCGTTAGTTCAACTTAGTAGTAACTTGGGGACCTTAGCTGATGGTCT 3403 Query 384 GGGCTGTTTCCCTCTCG 400 ||| | ||||||||||| Sbjct 3402 GGGTTCTTTCCCTCTCG 3386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177267598848