Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq4175 313 4e-83 seq3639 158 2e-36 seq2516 109 9e-22 seq46 95.1 2e-17 seq24585 78.8 2e-12 >seq4175 Length=745 Score = 313 bits (346), Expect = 4e-83 Identities = 192/203 (95%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 544 TCGAGCAACGCCAATAGACCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 603 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 604 AGTGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 662 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 663 TCCACGTTACCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCGAGCAGCTTG 722 Query 181 CGCTTACGGCTTACGTCACCGCC 203 ||||||||||| ||||| ||||| Sbjct 723 CGCTTACGGCTGACGTCGCCGCC 745 >seq3639 Length=2359 Score = 158 bits (174), Expect = 2e-36 Identities = 96/102 (94%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGC 252 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2358 ACGTCGCCGCCATAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAAGTCCGT 2299 Query 253 GCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||||||||||||||| |||||||||||||||||||||||| Sbjct 2298 GCAATGATCTGCCCGCCGATGGCGGCCTGGATCGCGACGTCG 2257 >seq2516 Length=21774 Score = 109 bits (120), Expect = 9e-22 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 82 CCAACCTG-AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTT 140 ||||| || || | || ||||| ||||| | | || | || ||||| || || |||| Sbjct 10891 CCAACGTGCAGAATGGCGAGGAACGCTTCCT-GCGGCAGCTCAACGTTACCGACCTGCTT 10833 Query 141 CATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACC 200 ||| || || ||||| | || ||||||| |||||||| ||||||||| ||||| || Sbjct 10832 CATACGCTTCTTACCTTCTTTCTGCTTCTGCAGCAGCTTTTTCTTACGGCTGACGTCGCC 10773 Query 201 GCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGAT 260 |||||||||||| ||||| ||||| || | || || || | | ||||| || || Sbjct 10772 GCCGTAGCATTTCGCCAGGACGTTTTTACGCAGCTGTTTCACCGTAGAGCGCGCGATAAT 10713 Query 261 CTGCCCGCCAATGGCGGCCTGGATCGCGA 289 || || ||||| ||||| ||||||| Sbjct 10712 GTGGTTACCGATGGCCGCCTGAATCGCGA 10684 >seq46 Length=971285 Score = 95.1 bits (104), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCT 160 ||||||||| | | || ||||| || ||||| | || |||||| || || || ||| Sbjct 781212 GAAGGCTTCCT-GCGGGATTTCGACCTTGCCGAACTGCCGCATGCGCTTCTTGCCTTCCT 781270 Query 161 TTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTA 220 | ||||| || || ||||||||||| || ||||| ||||| |||||||| ||| | Sbjct 781271 TCTGCTTTTCCAGAAGCTTGCGCTTGCGCGAGACGTCGCCGCCATAGCATTTTGCCGTCA 781330 Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 ||| ||| | || ||| || || ||||| || | | ||||| ||||| |||| Sbjct 781331 CGTCCTTGCGCAGGGCCGAGATGGTTTCACGCGCGATCACCGTGCCGCCGATGGCCGCCT 781390 Query 281 GGATCGCGA 289 |||||| || Sbjct 781391 GGATCGGGA 781399 >seq24585 Length=267 Score = 78.8 bits (86), Expect = 2e-12 Identities = 99/134 (74%), Gaps = 8/134 (6%) Strand=Plus/Plus Query 165 CTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTT 224 |||||| || ||||||||||| ||| | | ||||||||||||||| ||||| || || | Sbjct 1 CTTCTCGAGAAGCTTGCGCTTGCGGGTGATGTCACCGCCGTAGCACTTGGCGAGCACATC 60 Query 225 CTTTCTGAGAGCCTTGACGGA-GGTC---CGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 ||| | || || ||||| |||| || || ||||| || | || || || |||| Sbjct 61 CTTGCGGATCGC----ACGGATGGTCTCGCGGGCGATGATGCGCGCACCGATCGCCGCCT 116 Query 281 GGATCGCGACGTCG 294 |||||| || ||| Sbjct 117 GGATCGGCACCTCG 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838163344832